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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Tabular Data Transformation With PandasUse when when converting mwTab-formatted metabolomics files (containingVotes: 0GitHub stars: 16
- Tabular Results Aggregation And ComparisonUse when when you have chemical annotations (GNPS matches) distributedVotes: 0GitHub stars: 16
- Tanaka Physicochemical Descriptor HandlingUse when you have raw HPLC column metadata arrays containing Tanaka parameterVotes: 0GitHub stars: 16
- Tandem Mass Spectra Embedding GenerationUse when you have tandem mass spectra (in .msp or compatible format)Votes: 0GitHub stars: 16
- Tandem Mass Spectra Fragmentation ParsingUse when when you have raw tandem mass spectra in mz/intensity formatVotes: 0GitHub stars: 16
- Tandem Mass Spectra InterpretationUse when you have an unknown MS/MS spectrum (tandem mass spectrum) withVotes: 0GitHub stars: 16
- Tandem Mass Spectra Peptide MatchingUse when you have centroided LC-MS/MS spectra (in MGF, mzXML, mzML, orVotes: 0GitHub stars: 16
- Tandem Mass Spectra StandardizationUse when you have acquired raw tandem MS data from ProteomeXchange orVotes: 0GitHub stars: 16
- Tandem Mass Spectra Structural Similarity AssessmentUse when you have pairs of cleaned tandem mass spectra with known chemicalVotes: 0GitHub stars: 16
- Tandem Mass Spectrometry Data InterpretationUse when you have high-resolution MS2 data (.ms2 format) from tandemVotes: 0GitHub stars: 16
- Tandem Mass Spectrometry Fragmentation SimulationUse when you have a new fragmentation acquisition strategy (e.g., a weightedVotes: 0GitHub stars: 16
- Tandem Mass Spectrometry Ion Fragmentation Pattern AnalysisUse when after MS1 feature extraction and prescreening quality controlVotes: 0GitHub stars: 16
- Tandem Mass Spectrometry Metadata StandardizationUse when you have raw MS/MS spectra from public repositories (e.Votes: 0GitHub stars: 16
- Tandem Mass Spectrometry Mirror Plot ConstructionUse when when you have raw LC-MS or LC-IMS-MS data in instrument formatVotes: 0GitHub stars: 16
- Tandem Mass Spectrum ClusteringUse when you have a large collection of tandem mass spectra (mzML, mzXML,Votes: 0GitHub stars: 16
- Tandem Mass Spectrum DecodingUse when when you have raw predictions from a trained fragment generationVotes: 0GitHub stars: 16
- Tandem Mass Spectrum Deconvolution Isotope Annotation'Use when you have aligned features characterized across multiple dimensionsVotes: 0GitHub stars: 16
- Tandem Mass Spectrum NormalizationUse when preparing tandem MS/MS datasets for cross-dataset similarityVotes: 0GitHub stars: 16
- Tandem Mass Spectrum ParsingUse when when you have raw or instrument-native tandem mass spectrometryVotes: 0GitHub stars: 16
- Tandem Mass Spectrum Prediction Fragment LevelUse when you have a molecular structure (SMILES, InChI, or chemical formula)Votes: 0GitHub stars: 16
- Tandem Mass Spectrum Preprocessing And NormalizationUse when you have acquired raw MS/MS spectra (in MGF or mzML format)Votes: 0GitHub stars: 16
- Tandem Ms Data Annotation And CurationUse when you have an unknown tandem MS/MS spectrum (precursor m/z andVotes: 0GitHub stars: 16
- Tandem Ms Data ReorganizationUse when importing MS/MS spectral libraries (particularly from MoNA orVotes: 0GitHub stars: 16
- Tandem Ms Feature AssessmentUse when after importing raw peak tables from tandem MS/MS preprocessingVotes: 0GitHub stars: 16
- Tandem Ms Feature Table Import And ParsingUse when when you have raw feature tables exported from a tandem LC-MS/MSVotes: 0GitHub stars: 16
- Tandem Ms Output InterpretationUse when you have received spectrum predictions (fragment masses andVotes: 0GitHub stars: 16
- Tandem Ms Peak AssignmentUse when when you have experimental tandem MS spectra (with peak m/zVotes: 0GitHub stars: 16
- Tandem Ms Spectral Data InterpretationUse when you have untargeted MS2 spectral data in MS2MP-compatible formatVotes: 0GitHub stars: 16
- Tanimoto Fingerprint Ground Truth ComputationUse when when preparing paired MS/MS spectra for training or validationVotes: 0GitHub stars: 16
- Tanimoto Score Threshold OptimizationUse when when you have a set of MS/MS spectra with ground-truth structuralVotes: 0GitHub stars: 16
- Tanimoto Similarity ComputationUse when you have a trained MS2DeepScore neural network and a set ofVotes: 0GitHub stars: 16
- Tanimoto Similarity Scoring ImplementationUse when when you have paired mass spectrometry spectra (e.g., from GNPS,Votes: 0GitHub stars: 16
- Target List Coordinate MappingUse when you have a CSV-formatted target list with m/z, retention time,Votes: 0GitHub stars: 16
- Target List Matching And AlignmentUse when you have LC-MS data (mzML or netCDF format) and a predefinedVotes: 0GitHub stars: 16
- Targeted Compound Metadata FormattingUse when you have a raw list of target compounds (in .xlsx, CSV, or databaseVotes: 0GitHub stars: 16
- Targeted Dia Data Extraction From Raw SpectraUse when when you have raw diaPASEF mzML files, a transition list withVotes: 0GitHub stars: 16
- Targeted Feature Extraction From LcmsUse when you have a curated target list of m/z values, retention times,Votes: 0GitHub stars: 16
- Targeted Metabolite Detection Parameter OptimizationUse when when you have centroided .mzML LC–MS runs and a target listVotes: 0GitHub stars: 16
- Targeted Metabolite ExtractionUse when you have centroided LC-MS data (.mzML format) and a curatedVotes: 0GitHub stars: 16
- Targeted Metabolite Screening Mode ConfigurationUse when beginning a targeted LC–MS metabolomics or lipidomics studyVotes: 0GitHub stars: 16
- Targeted Metabolomics Feature ElaborationUse when you have targeted metabolomics data with peak area intensitiesVotes: 0GitHub stars: 16
- Targeted Peak Detection And IntegrationUse when you have centroided LC–MS data in .mzML format, a validatedVotes: 0GitHub stars: 16
- Targeted Peak Detection Screening And ValidationUse when you have centroided mzML LC–MS data, a curated list of targetVotes: 0GitHub stars: 16
- Targeted Peak Extraction Ms1Use when you have raw MS data in a supported instrument format (AgilentVotes: 0GitHub stars: 16
- Targeted Peak Integration ConfigurationUse when when performing targeted quantification of known compounds inVotes: 0GitHub stars: 16
- Targeted Proteomics Feature FilteringUse when you have loaded transition group chromatogram data from sqMassVotes: 0GitHub stars: 16
- Targeted Transition List GenerationUse when you have a set of lipid targets defined by species name, acylVotes: 0GitHub stars: 16
- Taxonomic Classification MergingUse when you have a GNPS DBResult file with spectral library matchesVotes: 0GitHub stars: 16
- Taxonomic Weighting In AnnotationUse when you have a feature table with candidate metabolite annotationsVotes: 0GitHub stars: 16
- Taxonomy Database QueryingUse when a paired omics project record contains a genome identifier (e.g.,Votes: 0GitHub stars: 16