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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Spectral Structural Similarity ComputationUse when when you have pre-trained embedding vectors (e.g., from MSBERT)Votes: 0GitHub stars: 16
- Spectral Tensor Representation And Preprocessing'Use when when preparing MS/MS spectra from .msp files for transformer-basedVotes: 0GitHub stars: 16
- Spectral To Structure Mapping PredictionUse when you have preprocessed 1D ¹H and/or ¹³C NMR spectra from an unknownVotes: 0GitHub stars: 16
- Spectral Token DesignUse when when you need to prepare mass spectra and molecular structuresVotes: 0GitHub stars: 16
- Spectral Topic Modeling LdaUse when when you have a collection of normalized mass spectrometry spectraVotes: 0GitHub stars: 16
- Spectral Vector Normalization By IntensityUse when when converting pre-processed MS/MS spectra into fixed-lengthVotes: 0GitHub stars: 16
- Spectral Vector Representation And EncodingUse when when you have a set of mass spectra (query or library) thatVotes: 0GitHub stars: 16
- Spectral Vectorization For IndexingUse when when you have a collection of MS/MS reference spectra and unknownVotes: 0GitHub stars: 16
- Spectral Visualization And Result InterpretationUse when after peak clustering, network filtering, and database matchingVotes: 0GitHub stars: 16
- Spectral Window ExtractionUse when you have loaded multidimensional MS data (from MZA HDF5 filesVotes: 0GitHub stars: 16
- Spectral Workflow ValidationUse when after implementing or modifying a cross-language integrationVotes: 0GitHub stars: 16
- Spectroscopic Data PreprocessingUse when when you have raw spectroscopic measurements in heterogeneousVotes: 0GitHub stars: 16
- Spectrum Alignment Performance BenchmarkingUse when you have tandem MS spectra from structurally related or knownVotes: 0GitHub stars: 16
- Spectrum Alignment ScoringUse when after generating probability predictions for potential modificationVotes: 0GitHub stars: 16
- Spectrum Annotation AugmentationUse when you have a TCN-predicted training set of MS/MS spectra withVotes: 0GitHub stars: 16
- Spectrum Array ValidationUse when after applying any sequence of spectrum preprocessing operationsVotes: 0GitHub stars: 16
- Spectrum Binning And NormalizationUse when you have raw, high-resolution MS/MS spectra in mzML, mzXML,Votes: 0GitHub stars: 16
- Spectrum Chromatogram Mobilogram RenderingUse when you have mass spectrometry data in a Pandas DataFrame with columnsVotes: 0GitHub stars: 16
- Spectrum Cluster Assignment'Use when you have computed a sparse pairwise distance matrix from nearestVotes: 0GitHub stars: 16
- Spectrum Data FormattingUse when you have acquired raw or semi-processed mass spectra and needVotes: 0GitHub stars: 16
- Spectrum Data LoadingUse when when you have a USI (e.g., mzspec:MTBLS1124:QC07.mzML) pointingVotes: 0GitHub stars: 16
- Spectrum Document Conversion Peak Loss RepresentationUse when when preparing MS/MS spectral data for training word-embeddingVotes: 0GitHub stars: 16
- Spectrum Embedding ClusteringUse when after embedding MS/MS spectra into 32-dimensional GLEAMS vectors,Votes: 0GitHub stars: 16
- Spectrum Embedding IndexingUse when you have pre-computed Word2vec embeddings of mass spectra andVotes: 0GitHub stars: 16
- Spectrum Feature Engineering ValidationUse when when implementing or auditing a deep learning pipeline for MS/MS-basedVotes: 0GitHub stars: 16
- Spectrum Feature VectorizationUse when you have raw mass spectrometry spectra (peak lists or intensityVotes: 0GitHub stars: 16
- Spectrum Filtering And NormalizationUse when you have raw or minimally processed tandem MS spectra (in mzML,Votes: 0GitHub stars: 16
- Spectrum Filtering With Deletion LoggingUse when processing heterogeneous mass spectrometry libraries (e.g.,Votes: 0GitHub stars: 16
- Spectrum Fingerprint Contrastive LearningUse when when you have paired tandem MS spectra and corresponding molecularVotes: 0GitHub stars: 16
- Spectrum Grouping And AggregationUse when you have loaded raw PSM search results from a proteomics searchVotes: 0GitHub stars: 16
- Spectrum Metadata Extraction ValidationUse when when ingesting heterogeneous MS spectral data from multipleVotes: 0GitHub stars: 16
- Spectrum Metadata ExtractionUse when when you have raw mass spectrometry data from diverse instrumentVotes: 0GitHub stars: 16
- Spectrum Metadata FilteringUse when importing mass spectra from multiple open mass spectra librariesVotes: 0GitHub stars: 16
- Spectrum Metadata HandlingUse when when you have a USI (Universal Spectrum Identifier) string referencingVotes: 0GitHub stars: 16
- Spectrum Metadata Normalization Across FormatsUse when you have mass-spectrometry data files in mixed formats (e.Votes: 0GitHub stars: 16
- Spectrum Metadata ParsingUse when a user submits one or more MS/MS spectra (via .mgf file, USIVotes: 0GitHub stars: 16
- Spectrum Metadata Title ParsingUse when when you have PSM files from a search engine (e.g., MaxQuant,Votes: 0GitHub stars: 16
- Spectrum Metadata ValidationUse when after importing raw mass spectrometry data from mzML, mzXML,Votes: 0GitHub stars: 16
- Spectrum Normalization And StandardizationUse when you have raw MS2 spectra in common formats (mzML, mzXML, msp,Votes: 0GitHub stars: 16
- Spectrum Object Creation And PreprocessingUse when when you have raw tandem mass spectrometry peak data (m/z andVotes: 0GitHub stars: 16
- Spectrum Object Instantiation From XmlUse when when you have parsed XML elements from an mzML or mzML.gz fileVotes: 0GitHub stars: 16
- Spectrum Object InstantiationUse when after successfully parsing raw spectral data from one of theVotes: 0GitHub stars: 16
- Spectrum Object Schema DesignUse when when building a mass spectrometry data import pipeline thatVotes: 0GitHub stars: 16
- Spectrum Pair PredictionUse when you have pairs of MS/MS spectra and need to estimate their structuralVotes: 0GitHub stars: 16
- Spectrum Pair Retrieval And RankingUse when you have a test set of annotated MS/MS spectra with known structuralVotes: 0GitHub stars: 16
- Spectrum Peak Counting And ReportingUse when when you need to quantify and compare the filtering efficacyVotes: 0GitHub stars: 16
- Spectrum Peak MatchingUse when you have an experimental tandem mass spectrum (peaks with m/zVotes: 0GitHub stars: 16
- Spectrum Peak To Fragment MappingUse when when you have a tandem mass spectrum (MS/MS) and a ProFormaVotes: 0GitHub stars: 16
- Spectrum Plot Generation Mz IntensityUse when you have mass spectrometry spectral data loaded into a PandasVotes: 0GitHub stars: 16
- Spectrum Preprocessing And NormalizationUse when you have raw MS/MS spectra in MGF or other standard formatsVotes: 0GitHub stars: 16