Claude Skills by HolobiomicsLab

Use when when you have raw LC-MS data in mzML format (converted from

Use when your MZmine MGF and CSV input files contain mixed or ambiguous

Use when when beginning preprocessing of a new LC-MS dataset with mzML

Use when you have acquired MS-DIAL peak lists in both positive and negative

Use when when you have loaded a raw mass spectrum (e.g. ESI_NEG_SRFA.

Use when you have raw MS/MS spectra in supported formats (.mgf, .mzML,

Use when loading raw mass spectrometry data (MGF, mzML, or msp format)

Use when when you have SMILES strings representing neutral organic molecules

Use when you have raw ICP-MS ion concentration measurements (e.g., Ca44,

Use when you have a constraint-based metabolic model in SBML or similar

Use when when you need to assess whether retention times measured on

Use when you have a Thermo Fisher Scientific .raw file from an LC-MS

Use when after completing Part 4 (Identification of ISF Features) in

Use when after completing ISFrag Part 4 (Identification of ISF Features)

Use when you have loaded MSI data with an extracted peak list and need

Use when after matrix annotation has been performed on mass spectrometry

Use when after completing differential isoform expression analysis using

Use when when you have extracted mass tracks (EICs) from individual LC-MS

Use when after completing peak picking, sample alignment, and before

Use when when processing MS1 mass tracks from a single sample and you

Use when after isotopic correction has been performed on MSI ion images

Use when when isotope visibility in the Maven GUI isotopes widget does

Use when you have LC-MS peak tables from parallel unlabeled and labeled

Use when you have LC-MS FAM measurements from an isotope-labeling experiment

Use when after basepeak_finder has identified base peaks from isotope-labelled

Use when you have a detected feature table (m/z, drift_time, retention_time,

'Use when when building a mass spectrometry analysis pipeline that requires

Use when after feature detection has produced a TSV feature table (from

Use when when performing feature detection on centroided DDA mzML files

Use when you have MS1-format mass spectrometry files and need to determine

Use when you have high-resolution centroided mzML files from Orbitrap

Use when when you have LC/MS feature data with observed m/z and intensity

Use when you have MS2 spectra from peptides with known stable isotope

Use when you have a peptide sequence and need to predict its theoretical

Use when when you have one or more peptide sequences (as strings) and

Use when when you have a peptide sequence, MS2 fragment charge states,

Use when when analyzing LC-MS data from stable isotope labeling experiments

Use when your peak table contains features suspected of being artifacts

Use when after feature detection has produced candidate formula–adduct

Use when you have a peak table from tandem MS preprocessing (e.g., MS-DIAL,

Use when when you have one or more peptide sequences (as strings) and

Use when after loading raw FT-ICR MS peak lists with assigned molecular

Use when you have a feature table (m/z, drift_time, retention_time, intensity)

Use when after DEIMoS isotope detection has assigned potential isotopic

Use when after isotope detection has enumerated C13 isotopologue patterns

'Use when you have LC-MS data from isotope labeling experiments where

Use when after sample alignment and peak picking have produced an aligned

Use when after structural cluster assignment and correlation clustering

Use when you have selected statistically significant features from multi-assay

Use when when you have measured fractional abundances of isotopologues