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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Spectral Dataset Partitioning And Train Test CurationUse when when you have a pre-cleaned spectral library (e.g., GNPS, MoNA,Votes: 0GitHub stars: 16
- Spectral Denoising Formula MethodUse when you have a noisy MS/MS spectrum and need to identify and removeVotes: 0GitHub stars: 16
- Spectral Denoising Via Training Data FilteringUse when you have untargeted MS2 spectra from environmental or clinicalVotes: 0GitHub stars: 16
- Spectral Dimension VerificationUse when after reading an imzML file (continuous or processed format)Votes: 0GitHub stars: 16
- Spectral Dimensionality ReductionUse when you have high-resolution tandem MS spectra (in mzML, mzXML,Votes: 0GitHub stars: 16
- Spectral Document Representation HandlingUse when you have per-sample MS2 spectra (in matchms-compatible formatsVotes: 0GitHub stars: 16
- Spectral Embedding Extraction From Neural NetworksUse when you have a set of preprocessed MS/MS spectra (binned to 10,000Votes: 0GitHub stars: 16
- Spectral Embedding GenerationUse when you have a collection of pre-processed MS/MS spectra (binned,Votes: 0GitHub stars: 16
- Spectral Embedding Rationality VerificationUse when after training a transformer-encoder-based mass spectrometryVotes: 0GitHub stars: 16
- Spectral Entropy CalculationUse when when you have preprocessed MS/MS spectral peak data (m/z andVotes: 0GitHub stars: 16
- Spectral Entropy Quality AssessmentUse when after feature detection and alignment in untargeted MS dataVotes: 0GitHub stars: 16
- Spectral Entropy Similarity ComputationUse when you need to measure the similarity between two MS/MS spectraVotes: 0GitHub stars: 16
- Spectral Feature Annotation And LabelingUse when you have a detected feature table (m/z, drift_time, retention_time,Votes: 0GitHub stars: 16
- Spectral Feature AnnotationUse when after auto-deconvolution has resolved co-eluting GC-MS peaksVotes: 0GitHub stars: 16
- Spectral Feature Chemical AssignmentUse when you have spectral feature data annotated by both in silico structuralVotes: 0GitHub stars: 16
- Spectral Feature Clustering And ComparisonUse when after identifying statistically significant LC-MS features (e.Votes: 0GitHub stars: 16
- Spectral Feature Clustering By Intensity CorrelationUse when you have an annotated LC-MS feature table with KEGG candidateVotes: 0GitHub stars: 16
- Spectral Feature ConsolidationUse when when you have generated separate MemoMatrix objects from independentVotes: 0GitHub stars: 16
- Spectral Feature EngineeringUse when you have molecular structures (SMILES or graph representations)Votes: 0GitHub stars: 16
- Spectral Feature Extraction And AnnotationUse when you have raw LC/MS data in mzML format and need to perform non-targetedVotes: 0GitHub stars: 16
- Spectral Feature ExtractionUse when you have raw mass-spectrometry data (precursor m/z, ionizationVotes: 0GitHub stars: 16
- Spectral Feature NormalizationUse when when you have raw LC-MS metabolomics data in .mzML or .npy formatVotes: 0GitHub stars: 16
- Spectral Feature Scrambling PermutationUse when when performing large-scale untargeted metabolomics annotationsVotes: 0GitHub stars: 16
- Spectral Feature StandardizationUse when after peak-picking stage completes on centroided mzML or netCDFVotes: 0GitHub stars: 16
- Spectral Feature Table GenerationUse when you have raw LC-MS data in mzXML format (or vendor formats convertibleVotes: 0GitHub stars: 16
- Spectral Feature Vector AggregationUse when you have generated per-sample MS2 fingerprints (as spec2vecVotes: 0GitHub stars: 16
- Spectral Feature Vector GenerationUse when you have a collection of MS/MS spectra in standard formats (mzML,Votes: 0GitHub stars: 16
- Spectral File Format ConversionUse when when you have a GNPS molecular networking job archive (downloadedVotes: 0GitHub stars: 16
- Spectral File Format ParsingUse when you receive raw spectral data files (jcamp, RAW, or mzML) fromVotes: 0GitHub stars: 16
- Spectral Fingerprint VectorizationUse when you have MS2 fragmentation spectra from multiple metabolomicsVotes: 0GitHub stars: 16
- Spectral Fingerprint Web Service QueryUse when you have a high-resolution LC-MS/MS spectrum or pre-computedVotes: 0GitHub stars: 16
- Spectral Format Conversion Mzml To ProprietaryUse when after clustering features with RAMClustR and inferring molecularVotes: 0GitHub stars: 16
- Spectral Format ConversionUse when when raw spectral data exists in one mass spectrometry fileVotes: 0GitHub stars: 16
- Spectral Format Parsing And ValidationUse when you have raw or unprocessed MS/MS spectral data in standardVotes: 0GitHub stars: 16
- Spectral Fragment AssignmentUse when when you have an experimental tandem mass spectrum (peaks withVotes: 0GitHub stars: 16
- Spectral Fragment Identifier MatchingUse when when you have downloaded fragment records from separate experimentalVotes: 0GitHub stars: 16
- Spectral Fragment Ion AnnotationUse when you have an MS/MS spectrum (m/z and intensity arrays) and aVotes: 0GitHub stars: 16
- Spectral Fragmentation Motif AnalysisUse when when you have metabolomics intensity data with metabolites groupedVotes: 0GitHub stars: 16
- Spectral Graph Construction From FragmentsUse when after you have aligned fragment ion pairs between two MS/MSVotes: 0GitHub stars: 16
- Spectral Graph InterpretationUse when after submitting MS/MS data and feature tables to GNPS and receivingVotes: 0GitHub stars: 16
- Spectral Image FilteringUse when when generating augmented variants of single-channel or multi-channelVotes: 0GitHub stars: 16
- Spectral Image RenderingUse when when you have parsed and validated spectral data (jcamp, RAW,Votes: 0GitHub stars: 16
- Spectral Intensity NormalisationUse when processing raw MS/MS spectra (in MGF, mzML, mzXML, JSON, orVotes: 0GitHub stars: 16
- Spectral Intensity Normalization Across ModalitiesUse when you have raw spectral data from multiple complementary spectroscopicVotes: 0GitHub stars: 16
- Spectral Intensity NormalizationUse when after removing precursor and noise peaks from an MsmsSpectrumVotes: 0GitHub stars: 16
- Spectral Intensity ThresholdingUse when you have loaded raw INADEQUATE NMR spectrum data and need toVotes: 0GitHub stars: 16
- Spectral Intensity Trace ExtractionUse when you have a Thermo Fisher Orbitrap .raw file and need to recoverVotes: 0GitHub stars: 16
- Spectral Ion Matching Across VendorsUse when you have raw line-scan MSI data from any supported vendor (AgilentVotes: 0GitHub stars: 16
- Spectral Json ParsingUse when after submitting an LC-MS/MS fragmentation spectrum to the MSNovelistVotes: 0GitHub stars: 16
- Spectral Library Annotation AugmentationUse when you have a GNPS DBResult file containing spectral library matchesVotes: 0GitHub stars: 16