All authors
Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- S4 Class Object Memory ProfilingUse when when designing or optimizing S4-based data backends (such asVotes: 0GitHub stars: 16
- Sample Batch Balancing Across Classification DimensionsUse when designing multi-batch LC/GC-MS experiments where samples belongVotes: 0GitHub stars: 16
- Sample Batch Metadata OrganizationUse when you have tab-delimited metabolomics data with columns for aliquotVotes: 0GitHub stars: 16
- Sample Capacity Constraint SettingUse when when designing injection sequences for LC/GC-MS multi-omicsVotes: 0GitHub stars: 16
- Sample Centric Metabolite AnnotationUse when after MZmine feature detection and molecular networking on aVotes: 0GitHub stars: 16
- Sample Group Injection AggregationUse when when you have picked and annotated MS1 features from replicateVotes: 0GitHub stars: 16
- Sample Information Metadata ParsingUse when when you have a validated ReDU sample-information metadata fileVotes: 0GitHub stars: 16
- Sample Label MappingUse when you have a raw peak table (CSV format, from any of 12 supportedVotes: 0GitHub stars: 16
- Sample Membership TrackingUse when when aligning detected features across multiple LC-IMS-MS/MSVotes: 0GitHub stars: 16
- Sample Metadata Annotation For LcmsUse when when you have loaded centroided .mzML files into a Spectra objectVotes: 0GitHub stars: 16
- Sample Metadata ExtractionUse when when you have an Excel file uploaded by a user following theVotes: 0GitHub stars: 16
- Sample Metadata Integration For QcUse when when you have an aligned MemoMatrix (sample-by-feature occurrenceVotes: 0GitHub stars: 16
- Sample Metadata IntegrationUse when when you have LC-MS peak table data in Excel format (e.g., fromVotes: 0GitHub stars: 16
- Sample Metadata Stratification And FilteringUse when when you have retrieved a large, heterogeneous collection ofVotes: 0GitHub stars: 16
- Sample Missingness FilteringUse when when you have loaded (un)targeted metabolite data into a MetaboprepVotes: 0GitHub stars: 16
- Sample Partitioning By MetadataUse when you have a merged MGF file (e.g., from MZmine output) containingVotes: 0GitHub stars: 16
- Sample Prioritization Through Structural ClusteringUse when you have 2D NMR spectral data (HSQC, HMBC, COSY) from multipleVotes: 0GitHub stars: 16
- Sample Relationship VisualizationUse when after generating aligned MS2 fingerprints (sample-by-fingerprintVotes: 0GitHub stars: 16
- Sample Replicate Pair AssessmentUse when you have high-throughput replicate measurements (e.g., massVotes: 0GitHub stars: 16
- Sample Spectrum Metadata AlignmentUse when you have a GNPS task ID from a completed molecular networkingVotes: 0GitHub stars: 16
- Sample Study Size Stratified Algorithm SelectionUse when when beginning mass alignment in a multi-sample LC-MS metabolomicsVotes: 0GitHub stars: 16
- Sample To Reference Retention Time RemappingUse when after mass tracks have been aligned across samples into a MassGridVotes: 0GitHub stars: 16
- Sample Type Stratified Feature MaskingUse when after feature detection but before statistical analysis, whenVotes: 0GitHub stars: 16
- Sample Vectorization Via Spectral FeaturesUse when you have unaligned MS2 spectra from multiple metabolomics samplesVotes: 0GitHub stars: 16
- Sampledata Annotation And AssignmentUse when after loading multiple LC-MS .mzML files into an MsExperimentVotes: 0GitHub stars: 16
- Saturated Peak ReconstructionUse when processing IM-MS data files (Agilent .d or UIMF format) thatVotes: 0GitHub stars: 16
- Saturation Threshold ConfigurationUse when when executing peak integration on preprocessed GC-IMS dataVotes: 0GitHub stars: 16
- Savitzky Golay Filter ApplicationUse when apply Savitzky-Golay smoothing when your mass spectra containVotes: 0GitHub stars: 16
- Savitzky Golay Smoothing ApplicationUse when after filtering retention time and drift time ranges on rawVotes: 0GitHub stars: 16
- Scalability Extrapolation And Throughput EstimationUse when you have a new or modified LC-MS data processing tool and needVotes: 0GitHub stars: 16
- Scalable Network Inference High DimensionalUse when when working with feature abundance tables (rows=features, columns=samples)Votes: 0GitHub stars: 16
- Scan Filter File OrganizationUse when when converting mzML files to imzML format and the source mzMLVotes: 0GitHub stars: 16
- Scan Index Filtering By Ms LevelUse when when you have generated a scan index from rawrr::readIndex()Votes: 0GitHub stars: 16
- Scan Index Parsing And FilteringUse when you have a Thermo Orbitrap .raw file and need to (1) verifyVotes: 0GitHub stars: 16
- Scan Number Mapping Dictionary ConstructionUse when after performing LOWESS regression on landmark peak RT pairsVotes: 0GitHub stars: 16
- Scan Window Routing Mass SpectrometryUse when when processing LC-MS data with multiple overlapping m/z scanVotes: 0GitHub stars: 16
- Schema Compliance TestingUse when when uploading or ingesting a new paired omics project JSONVotes: 0GitHub stars: 16
- Schema Conformance CheckingUse when you have a collection of records in a standardized format (e.g.,Votes: 0GitHub stars: 16
- Schema Constraint CheckingUse when a user uploads a JSON project file to the platform and you needVotes: 0GitHub stars: 16
- Sciex Multiquant Data Export Format RecognitionUse when you have txt files exported from Sciex MultiQuant (>v3.0.3)Votes: 0GitHub stars: 16
- Scikit Learn Metric ComputationUse when you have prediction arrays (model outputs) and ground-truthVotes: 0GitHub stars: 16
- Score Distribution Analysis And Statistical Significance TestingUse when after computing a scoring function over all possible genomic-metabolomicVotes: 0GitHub stars: 16
- Score Distribution VisualizationUse when after computing link scores (e.g., strain correlation, IOKR,Votes: 0GitHub stars: 16
- Score Standardisation Z Score NormalizationUse when when comparing raw link scores (strain correlation or IOKR)Votes: 0GitHub stars: 16
- Scoring Function Sensitivity AnalysisUse when you have two or more complementary scoring functions (e.g.,Votes: 0GitHub stars: 16
- Scoring Module Unit TestingUse when after implementing or modifying the scoring module that computesVotes: 0GitHub stars: 16
- Search Engine Output ParsingUse when you have PSM output files from one or more search engines (e.g.,Votes: 0GitHub stars: 16
- Search Mode Configuration OptimizationUse when when you have a calibrated FT-ICR mass spectrum (e.g., ESI-NEGVotes: 0GitHub stars: 16
- Search Performance BenchmarkingUse when when you have two or more implementations of a spectral searchVotes: 0GitHub stars: 16
- Search Result Aggregation And NormalizationUse when you have executed batch searches across two or more domain-specificVotes: 0GitHub stars: 16