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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Conformer Ensemble ProcessingUse when you have a set of conformers that have already been filteredVotes: 0GitHub stars: 16
- Conformer Filtering Threshold SelectionUse when after RDKit has generated a large ensemble of 3D conformersVotes: 0GitHub stars: 16
- Conformer Generation And EnumerationUse when you have SMILES strings of molecules at specific ionizationVotes: 0GitHub stars: 16
- Conformer Generation RdkitUse when when you have ionized adduct structures (SMILES or MOL format)Votes: 0GitHub stars: 16
- Confounder Adjustment Epidemiological AnalysisUse when when testing associations between metabolic features (from NMRVotes: 0GitHub stars: 16
- Confusion Matrix GenerationUse when after training or evaluating a classification model (e.g., MS2DeepScoreVotes: 0GitHub stars: 16
- Connected Component Decomposition In Mass SpectrometryUse when you have a feature list from LC-MS preprocessing (e.g., asariVotes: 0GitHub stars: 16
- Consensus Classification ReconciliationUse when you have spectral features annotated by both in silico structuralVotes: 0GitHub stars: 16
- Consensus Mass DeterminationUse when after constructing individual mass tracks from mzTree data binsVotes: 0GitHub stars: 16
- Consensus Spectrum Assembly From Fragmentation SpectraUse when you have detected a single chromatographic peak in DDA LC-MS/MSVotes: 0GitHub stars: 16
- Consensus Taxonomy GenerationUse when when you have structural annotations from multiple sources (inVotes: 0GitHub stars: 16
- Constraint Based Flux Balance AnalysisUse when you have a generic genome-scale metabolic model (SBML format)Votes: 0GitHub stars: 16
- Constraint Based Flux Sampling And AnalysisUse when when you have constraint-based metabolic models for multipleVotes: 0GitHub stars: 16
- Constraint Based Model Sampling And Flux PredictionUse when you have constraint-based metabolic models with integrated multi-omicsVotes: 0GitHub stars: 16
- Container Image Build And DeploymentUse when you have a Dockerfile and source repository for a bioinformaticsVotes: 0GitHub stars: 16
- Container Image Building ConversionUse when your Nextflow metabolomics workflow has been validated withVotes: 0GitHub stars: 16
- Container Image ManagementUse when your LC-HRMS metabolomics data (.mzML or .abf files) must beVotes: 0GitHub stars: 16
- Container Image Selection And MountingUse when when deploying a Nextflow workflow across multiple executionVotes: 0GitHub stars: 16
- Container Port Mapping ConfigurationUse when you need to deploy a containerized web application (such asVotes: 0GitHub stars: 16
- Container Resource Allocation TuningUse when deploying a containerized .NET Framework application (e.g.,Votes: 0GitHub stars: 16
- Container Volume Mounting And File PersistenceUse when executing containerized conversion tools (e.g., AirdPro CLI)Votes: 0GitHub stars: 16
- Contrastive Learning Encoder ConstructionUse when you have mass spectrometry imaging (MSI) data with ion imagesVotes: 0GitHub stars: 16
- Contrastive Learning Encoder DesignUse when when you have mass spectrometry ion image data and need to learnVotes: 0GitHub stars: 16
- Contrastive Learning For Cross Modal RetrievalUse when you have paired MS/MS spectra and molecular structures (SMILESVotes: 0GitHub stars: 16
- Contrastive Learning Loss ImplementationUse when when you have paired augmented ion images processed throughVotes: 0GitHub stars: 16
- Contrastive Loss Implementation'Use when training embeddings from MS/MS spectra and you need to simultaneouslyVotes: 0GitHub stars: 16
- Contrastive Loss Integration With EncodersUse when you have a transformer encoder producing representations ofVotes: 0GitHub stars: 16
- Contrastive Pair GenerationUse when you have raw ion images from MSI data and need to train a contrastiveVotes: 0GitHub stars: 16
- Control Flow Diagram SynthesisUse when when you need to understand how a multi-instrument mass spectrometryVotes: 0GitHub stars: 16
- Controlled Vocabulary Term MappingUse when you have collected or inherited sample-information metadataVotes: 0GitHub stars: 16
- Converter Pipeline Integration And ExecutionUse when when you have a .msp mass spectra file with incomplete or missingVotes: 0GitHub stars: 16
- Convolutional Neural Network EncodingUse when you have pairs of augmented ion images from mass spectrometryVotes: 0GitHub stars: 16
- Convolutional Neural Network Layer DesignUse when you have 1H NMR spectral tensors as input and need to extractVotes: 0GitHub stars: 16
- Coordinate System Normalization 1based IndexingUse when when exporting quantified ion images and pixel metadata fromVotes: 0GitHub stars: 16
- Core Spectra Variable Definition And PopulationUse when when implementing a custom MsBackend class for the Spectra package,Votes: 0GitHub stars: 16
- Corpus Bag Of Words RepresentationUse when when you have raw LC-MS/MS data in MGF format and need to prepareVotes: 0GitHub stars: 16
- Corpus Preparation ValidationUse when when you have raw LC-MS-MS fragmentation spectra in MGF formatVotes: 0GitHub stars: 16
- Corpus Size Coverage Scaling AnalysisUse when when deploying a Word2Vec-based spectral similarity model (suchVotes: 0GitHub stars: 16
- Corrected Intensity Table ValidationUse when after applying one or more intensity drift correction strategiesVotes: 0GitHub stars: 16
- Correlation Cluster Network IntegrationUse when after identifying structural clusters (isotopologue groups,Votes: 0GitHub stars: 16
- Correlation Coefficient Computation Across SamplesUse when after XCMS feature detection and retention time correction,Votes: 0GitHub stars: 16
- Correlation Coefficient Computation For MetabolomicsUse when you have an aligned LCMS feature table (output from EclipseVotes: 0GitHub stars: 16
- Correlation Matrix ConstructionUse when after obtaining per-sample model predictions and metaboliteVotes: 0GitHub stars: 16
- Correlation Matrix Heatmap VisualizationUse when after computing a correlation matrix (e.g., Pearson correlationVotes: 0GitHub stars: 16
- Cosine Distance ScoringUse when when you have preprocessed mass spectra (peak-filtered, metadata-cleaned)Votes: 0GitHub stars: 16
- Cosine Similarity ComputationUse when when comparing two MS/MS spectra (query and reference) to quantifyVotes: 0GitHub stars: 16
- Cosine Similarity Matrix ComputationUse when after generating normalized dense embeddings for both queryVotes: 0GitHub stars: 16
- Cosine Similarity Ranking MetricsUse when when you have pre-computed spectral embeddings (vectors) forVotes: 0GitHub stars: 16
- Cosine Similarity Scoring ComputationUse when when you have imported and filtered mass spectrometry spectralVotes: 0GitHub stars: 16
- Cosine Similarity Spectral ClusteringUse when you have a collection of deconvolved mass spectra (in MGF orVotes: 0GitHub stars: 16