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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Compound Identifier StandardizationUse when ingesting compound metadata from multiple sources (PubChem,Votes: 0GitHub stars: 16
- Compound Internal Standard Ratio CalculationUse when immediately after loading metabolomics measurements into a SummarizedExperimentVotes: 0GitHub stars: 16
- Compound Isotope And Adduct GroupingUse when after XCMS feature detection, retention time correction, regrouping,Votes: 0GitHub stars: 16
- Compound Library Construction And CurationUse when when you have a set of query chemicals (e.g., ethyl hexanoate,Votes: 0GitHub stars: 16
- Compound List Annotation And FilteringUse when after marker identification or feature selection has producedVotes: 0GitHub stars: 16
- Compound Peak Association InferenceUse when after peak picking on INADEQUATE NMR spectra when you have aVotes: 0GitHub stars: 16
- Compound Reliability Filtering By Rsd ThresholdUse when apply this filter after batch correction of compound/internal-standardVotes: 0GitHub stars: 16
- Compound Retrieval Hit At K EvaluationUse when when you have generated spectral embeddings for a query setVotes: 0GitHub stars: 16
- Compound Specific Misalignment IdentificationUse when you have completed XCMS grouping on LC-MS data and suspect misalignedVotes: 0GitHub stars: 16
- Compound Specific Warping Function GenerationUse when xCMS alignment produces suspected misaligned feature groupsVotes: 0GitHub stars: 16
- Compound Standard Ratio NormalizationUse when you have raw peak area or intensity measurements for both compoundsVotes: 0GitHub stars: 16
- Compound Structural Fingerprint ComparisonUse when you have a set of query chemicals and a reference library (organizedVotes: 0GitHub stars: 16
- Compound Structural Similarity RetrievalUse when you have a collection of preprocessed MS/MS spectra with structuralVotes: 0GitHub stars: 16
- Compound Structure Comparison MetricsUse when you have two MS/MS spectra from related compounds (e.g., a referenceVotes: 0GitHub stars: 16
- Compound Structure Molecular EncodingUse when when you have SMILES strings or molecular structures for compoundsVotes: 0GitHub stars: 16
- Compound Structure RepresentationUse when when you have experimental MS/MS data (peak lists, precursorVotes: 0GitHub stars: 16
- Compressed File Header ParsingUse when you have a large indexed gzip file (igz format) with metadataVotes: 0GitHub stars: 16
- Computational Efficiency Single Pass Vs Repeated Detection'Use when when processing aligned LC-MS data across multiple samplesVotes: 0GitHub stars: 16
- Computational Environment ConfigurationUse when at the start of any DaDIA pipeline execution, or whenever youVotes: 0GitHub stars: 16
- Computational Performance Benchmarking And Timing MeasurementUse when when you need to validate that a newly published bioinformaticsVotes: 0GitHub stars: 16
- Computational Reproducibility VerificationUse when you have access to both raw data (deposited in a repositoryVotes: 0GitHub stars: 16
- Computational Resource Profiling And BenchmarkingUse when when evaluating a new or updated version of a data processingVotes: 0GitHub stars: 16
- Computational Throughput MeasurementUse when when you need to compare the computational efficiency of differentVotes: 0GitHub stars: 16
- Computational Variation DetectionUse when after peak detection and feature alignment in a metabolomicVotes: 0GitHub stars: 16
- Concentration Based Signal ScalingUse when you have loaded m/z peak data with metadata that includes aVotes: 0GitHub stars: 16
- Concentration Matrix Estimation Gc MsUse when after GCMSFormer (or similar Transformer model) has predictedVotes: 0GitHub stars: 16
- Concentration Prediction From Calibration ModelUse when you have (1) a set of calibration samples with known spikedVotes: 0GitHub stars: 16
- Conda Environment Setup And ActivationUse when preparing a fresh system or user account to run MSIGen for massVotes: 0GitHub stars: 16
- Condition Effect Matrix Generation'Use when you need to create a synthetic feature table with known, ground-truthVotes: 0GitHub stars: 16
- Conditional Allocation Design Patterns'Use when when designing a dataset storage layer that must handle variableVotes: 0GitHub stars: 16
- Conditional Dispatch Logic ImplementationUse when when accepting a file path as input in an MSI data processingVotes: 0GitHub stars: 16
- Conditional Dispatch Routing LogicUse when a mass spectrometry analysis pipeline must accept data fromVotes: 0GitHub stars: 16
- Conditional Dispatch RoutingUse when you have received a peak/feature table from an unknown or variableVotes: 0GitHub stars: 16
- Conditional Dispatch Workflow ImplementationUse when when you have loaded a raw mass spectrum (e.g., ESI_NEG_SRFA.dVotes: 0GitHub stars: 16
- Conditional Logic ImplementationUse when you have a user-submitted spectrum with domain-context metadataVotes: 0GitHub stars: 16
- Conditional Routing Logic ExtractionUse when you need to understand how a data-processing software systemVotes: 0GitHub stars: 16
- Conditional Routing LogicUse when you have received a USI string (formatted as mzspec:<namespace>:<resource>:<identifier_type>:<identifier>)Votes: 0GitHub stars: 16
- Conditional Threshold Logic Implementation'Use when when visualizing numeric columns with unknown or highly variableVotes: 0GitHub stars: 16
- Confidence Score Assignment And FilteringUse when after matching MRM transitions against a lipid reference database,Votes: 0GitHub stars: 16
- Confidence Score InterpretationUse when after executing forward inference on preprocessed mass spectrometryVotes: 0GitHub stars: 16
- Confidence Score Thresholding In ProteomicsUse when when loading search results from Data-Independent AcquisitionVotes: 0GitHub stars: 16
- Configuration Driven Batch ProcessingUse when when processing multiple PSM files from search engines (e.g.,Votes: 0GitHub stars: 16
- Configuration File GenerationUse when you need to set up a LipoCLEAN analysis for MS-DIAL lipid identificationsVotes: 0GitHub stars: 16
- Configuration File InterpretationUse when when you have PSM files from proteomics search engines (MaxQuant,Votes: 0GitHub stars: 16
- Configuration File ModificationUse when when you need to expand or contract a mass spectrometry datasetVotes: 0GitHub stars: 16
- Configuration File Validation DynaconfUse when when setting up NPLinker for natural products data mining andVotes: 0GitHub stars: 16
- Configuration Object PatternUse when when designing a library that needs to support multiple plottingVotes: 0GitHub stars: 16
- Configuration Schema ValidationUse when when you have generated or edited a LipoCLEAN `options.txt`Votes: 0GitHub stars: 16
- Conformer Ensemble Energy RankingUse when after RDKit has generated a large set of 3D conformers for aVotes: 0GitHub stars: 16
- Conformer Ensemble Generation Via CrestUse when you have a molecular geometry (XYZ format) and need to exploreVotes: 0GitHub stars: 16