All authors
Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Chromatogram Extraction And VisualizationUse when you have sqMass files containing pre-extracted transition groupVotes: 0GitHub stars: 16
- Chromatogram Netcdf File ImportUse when you have raw GCxGC-MS chromatogram data in NetCDF (CDF) formatVotes: 0GitHub stars: 16
- Chromatogram Peak Boundary DetectionUse when when you have loaded a TransitionGroup (extracted ion chromatogramVotes: 0GitHub stars: 16
- Chromatogram Peak Matching RegistrationUse when you have multiple LC-MS samples in mzML or mzXML format withVotes: 0GitHub stars: 16
- Chromatogram Plot Generation Retention TimeUse when you have mass spectrometry data loaded as a Pandas DataFrameVotes: 0GitHub stars: 16
- Chromatogram Retention Time VisualizationUse when you have mass spectrometry data loaded as a pandas DataFrameVotes: 0GitHub stars: 16
- Chromatogram Visualization GenerationUse when after importing mass spectrometry data in .raw, .d, or mzXMLVotes: 0GitHub stars: 16
- Chromatographic Alignment Parameter SelectionUse when after chromatographic peak detection (e.g. centWave) has beenVotes: 0GitHub stars: 16
- Chromatographic Alignment TuningUse when when processing a cohort of centroided mzML LC-MS files withVotes: 0GitHub stars: 16
- Chromatographic Baseline EstimationUse when you have extracted ion chromatogram (EIC) candidate data fromVotes: 0GitHub stars: 16
- Chromatographic Coelution DetectionUse when after feature detection when you have a feature table with m/z,Votes: 0GitHub stars: 16
- Chromatographic Data Structure AbstractionUse when when ingesting raw mass spectrometry data from multiple instrumentVotes: 0GitHub stars: 16
- Chromatographic Data StructuringUse when after parsing a centroid mzML file into (m/z, scan_number, intensity)Votes: 0GitHub stars: 16
- Chromatographic Data VisualizationUse when after peak detection has been completed and a feature tableVotes: 0GitHub stars: 16
- Chromatographic Feature ExtractionUse when you have centroided mzML files from LC- or GC-HRMS instrumentsVotes: 0GitHub stars: 16
- Chromatographic Feature RefinementUse when after performing retention-time-based grouping on LC-MS dataVotes: 0GitHub stars: 16
- Chromatographic Method Transfer Learning'Use when you have experimental RT measurements from a source chromatographicVotes: 0GitHub stars: 16
- Chromatographic Misalignment DetectionUse when after running XCMS-based alignment on LC-MS datasets with hundredsVotes: 0GitHub stars: 16
- Chromatographic Modality ClassificationUse when when ingesting raw or vendor-format mass spectrometry data filesVotes: 0GitHub stars: 16
- Chromatographic Noise ModelingUse when you need to generate blank or background-only .mzML files forVotes: 0GitHub stars: 16
- Chromatographic Peak Annotation VisualizationUse when after running tardisPeaks() with screening_mode=TRUE on centroidedVotes: 0GitHub stars: 16
- Chromatographic Peak CharacterizationUse when after screening-mode validation of your m/z and retention timeVotes: 0GitHub stars: 16
- Chromatographic Peak ClassificationUse when you have (1) a benchmark dataset of reference peaks with validatedVotes: 0GitHub stars: 16
- Chromatographic Peak Detection And GroupingUse when when you have processed LC-MS data through XCMS alignment butVotes: 0GitHub stars: 16
- Chromatographic Peak Detection And Integration'Use when after loading centroided .mzML LC-MS data and defining a targetVotes: 0GitHub stars: 16
- Chromatographic Peak Detection And SegmentationUse when you have raw LC-MS data (mzML or vendor format) and need toVotes: 0GitHub stars: 16
- Chromatographic Peak Detection Gradient DescentUse when you have LC-HRMS profile-mode data (retention time × m/z matrixVotes: 0GitHub stars: 16
- Chromatographic Peak Detection MswUse when you have raw mzML files from an FTICR-MS or other direct-injectionVotes: 0GitHub stars: 16
- Chromatographic Peak Detection Retention Time AlignmentUse when you have multiple high-resolution mzML files from LC-MS/MS experimentsVotes: 0GitHub stars: 16
- Chromatographic Peak Detection ValidationUse when you have centroided mzML data and a curated set of target moleculesVotes: 0GitHub stars: 16
- Chromatographic Peak Detection WaveletUse when you have loaded raw LC-MS or direct-injection FTICR-MS dataVotes: 0GitHub stars: 16
- Chromatographic Peak Detection With Prominence ControlUse when after constructing baseline-corrected mass tracks (either compositeVotes: 0GitHub stars: 16
- Chromatographic Peak Extraction And Retention Time FilteringUse when when you have LC-MS/MS raw data (mzML or netCDF format) andVotes: 0GitHub stars: 16
- Chromatographic Peak Isolation And RefinementUse when after sliding-window analysis has identified candidate TIC peaksVotes: 0GitHub stars: 16
- Chromatographic Peak LabelingUse when you have a user-defined reference list of isolated, high-confidenceVotes: 0GitHub stars: 16
- Chromatographic Peak Overlap ResolutionUse when analyzing GC-MS data containing overlapping chromatographicVotes: 0GitHub stars: 16
- Chromatographic Peak ProcessingUse when after peak detection when you have a table of detected peaksVotes: 0GitHub stars: 16
- Chromatographic Peak Quality AssessmentUse when when you have a feature table (CSV with m/z and retention timeVotes: 0GitHub stars: 16
- Chromatographic Peak Quality Metric EvaluationUse when when processing untargeted LC-MS metabolomics data with XCMSVotes: 0GitHub stars: 16
- Chromatographic Peak ResolutionUse when when you have loaded raw GC-MS data in netCDF or mzML formatVotes: 0GitHub stars: 16
- Chromatographic Peak Shape ComparisonUse when after retention-time-based and abundance-correlation-based featureVotes: 0GitHub stars: 16
- Chromatographic Profile Quality AssessmentUse when running targeted peak detection on LC-MS data acquired withVotes: 0GitHub stars: 16
- Chromatographic Resolution EvaluationUse when when you have a feature table from LC-MS peak detection (e.g.,Votes: 0GitHub stars: 16
- Chromatographic Retention Time MatchingUse when you have GC-MS data with multiple replicate injections or samples,Votes: 0GitHub stars: 16
- Chromatographic Window Coverage AssessmentUse when after extracting retention times from top MS1 features detectedVotes: 0GitHub stars: 16
- Chromatography Data DecimationUse when working with large GCIMS matrices where computational speedVotes: 0GitHub stars: 16
- Chromatography Data PreprocessingUse when you have raw spectra files from a liquid chromatography experimentVotes: 0GitHub stars: 16
- Chromatography Mass Spectrometry Data ProcessingUse when when you have raw GC–MS or LC–MS data (m/z vs retention timeVotes: 0GitHub stars: 16
- Chunk Wise Data Processing OptimizationUse when you have a large mass spectrometry dataset stored across multipleVotes: 0GitHub stars: 16
- Ci Cd Pipeline OrchestrationUse when you need to automate testing and quality checks on code changes—specificallyVotes: 0GitHub stars: 16