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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Blank Intensity Ratio FilteringUse when apply this filter after feature detection and before downstreamVotes: 0GitHub stars: 16
- Blank Sample Background Interference EstimationUse when after MS1 feature detection and accurate mass annotation, whenVotes: 0GitHub stars: 16
- Blank Sample Feature FilteringUse when you have a feature quantification table exported from MZmine3Votes: 0GitHub stars: 16
- Bleu Score Metric ComputationUse when you have a trained sequence-to-sequence model (such as GCMSFormer)Votes: 0GitHub stars: 16
- Blind Search Mode Parameter OptimizationUse when when you have tandem mass spectra from ribosomally synthesizedVotes: 0GitHub stars: 16
- Block Layout Analysis For Io OptimizationUse when when preparing NMR datasets for processing in NMRFx and theVotes: 0GitHub stars: 16
- Blockwise Data Parsing And IndexingUse when when you need random access into a large text or XML file thatVotes: 0GitHub stars: 16
- Blood Sample Processing Parameter ExtractionUse when when you have peripheral blood sample cohorts (plasma/serum)Votes: 0GitHub stars: 16
- Bond Connectivity PredictionUse when you have predicted or partially assembled molecular fragmentsVotes: 0GitHub stars: 16
- Bonferroni Multiple Testing CorrectionUse when when you have performed many pairwise correlation tests betweenVotes: 0GitHub stars: 16
- Box Cox Transformation Parameter Estimation'Use when you have raw LC-MS feature-intensity tables (rows: samples,Votes: 0GitHub stars: 16
- Breath Biomarker DiscoveryUse when you have GC–MS data from human breath samples and need to identifyVotes: 0GitHub stars: 16
- Breath Sample Feature NormalizationUse when after peak recognition has identified significant m/z signalsVotes: 0GitHub stars: 16
- Breath Volatile Peak ClassificationUse when after feature extraction and alignment when you have a numericalVotes: 0GitHub stars: 16
- Browser Security Policy ConfigurationUse when you need to run a web application locally (by opening index.htmlVotes: 0GitHub stars: 16
- Bruker Baf Data Import And ConversionUse when you have Bruker .d/.baf format mass spectrometry imaging dataVotes: 0GitHub stars: 16
- Bruker Mass Spectrum Data ImportUse when you have received a Bruker Solarix FT-ICR raw data directoryVotes: 0GitHub stars: 16
- Bruker Nmr Spectral Data ImportUse when you have raw Bruker NMR spectral files (from a Bruker instrument)Votes: 0GitHub stars: 16
- Bruker Solarix Format ParsingUse when you have acquired Bruker Solarix FT-ICR-MS raw data (e.g., ESI_NEG_SRFA.d)Votes: 0GitHub stars: 16
- Bruker Transient Data ImportUse when you have Bruker Solarix raw transient data (.d folders containingVotes: 0GitHub stars: 16
- Build Status DocumentationUse when when you need to validate that a development build release workflowVotes: 0GitHub stars: 16
- Building Block Annotation ExportUse when you have retrieved a user database entry (sequence or building-blockVotes: 0GitHub stars: 16
- Byte Offset Seek Operations'Use when when you have an indexed gzip-compressed mzML file and needVotes: 0GitHub stars: 16
- C Module IntegrationUse when you have raw mass spectrometry data in mzML or mzXML formatVotes: 0GitHub stars: 16
- C Python Interface WrappingUse when you have a mature C++ library (like OpenMS) with stable APIsVotes: 0GitHub stars: 16
- C Sharp Wrapper Invocation From RUse when when you need to read proprietary or binary data formats (e.g.,Votes: 0GitHub stars: 16
- C Sharp Wrapper Method ValidationUse when when integrating an R package that wraps a compiled .NET assemblyVotes: 0GitHub stars: 16
- Calibration Coefficient Accuracy AssessmentUse when after applying deimos.calibration.tunemix() to positive-modeVotes: 0GitHub stars: 16
- Calibration Curve Fitting Ms DataUse when you have raw mass spectrometry intensity data from targetedVotes: 0GitHub stars: 16
- Calibration Quality AssessmentUse when after applying polynomial m/z domain recalibration using a referenceVotes: 0GitHub stars: 16
- Calibration Residual CalculationUse when after a mass spectrum has been matched against a reference m/zVotes: 0GitHub stars: 16
- Candidate Filtering And ThresholdingUse when after generating candidate molecular formula and adduct pairsVotes: 0GitHub stars: 16
- Candidate Formula Ranking By Mass ErrorUse when after querying a formula database (KEGG, PubChem, or user-supplied)Votes: 0GitHub stars: 16
- Candidate Formula RankingUse when you have an observed m/z value from mass spectrometry imagingVotes: 0GitHub stars: 16
- Candidate Match RetrievalUse when when you have a query MS/MS spectrum (m/z and intensity pairs)Votes: 0GitHub stars: 16
- Candidate Metabolite PredictionUse when you have an unknown compound's mass spectrum (m/z peaks andVotes: 0GitHub stars: 16
- Candidate Metabolite RankingUse when when you have generated a set of predicted metabolite structuresVotes: 0GitHub stars: 16
- Candidate Metadata Record SerializationUse when after computing InChIKey and neighbourhood scores for libraryVotes: 0GitHub stars: 16
- Candidate Neighbourhood Analysis For Spectral MatchingUse when you have a query MS/MS spectrum matched against a library andVotes: 0GitHub stars: 16
- Candidate Peak Filtering AnnotationUse when you have a peak list extracted from MSI data that includes candidateVotes: 0GitHub stars: 16
- Candidate Psm Cardinality ControlUse when when rescoring PSMs from a search engine with MS²Rescore andVotes: 0GitHub stars: 16
- Candidate Rank ScoringUse when after compound database dereplication has generated per-spectrumVotes: 0GitHub stars: 16
- Candidate Ranking By Score'Use when you have a query mass spectrum and a set of candidate molecularVotes: 0GitHub stars: 16
- Candidate Spectrum Retrieval And RankingUse when when you have a large reference MS/MS spectral library (>10kVotes: 0GitHub stars: 16
- Candidate Structure Ranking From SpectrumUse when you have an experimental tandem mass spectrum (m/z and intensityVotes: 0GitHub stars: 16
- Candidate Structure RankingUse when you have (1) a set of candidate structures generated by in silicoVotes: 0GitHub stars: 16
- Carbon Oxidation State AssessmentUse when after molecular formula assignment from FT-ICR MS peak data,Votes: 0GitHub stars: 16
- Cardinal Imaging Object ConversionUse when you have mass spectrometry imaging data in Cardinal format (versionsVotes: 0GitHub stars: 16
- Cardinal Object Structure UnderstandingUse when when you have loaded a raw or processed Cardinal MSImagingExperimentVotes: 0GitHub stars: 16
- Cardinal Peak Processing Snr FilteringUse when when you have loaded an unprocessed Cardinal object from MSVotes: 0GitHub stars: 16