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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Cardinal To Seurat Object ConversionUse when after completing Cardinal-based preprocessing (feature summarization,Votes: 0GitHub stars: 16
- Cascade Search Strategy Fdr ControlUse when when searching high-resolution mass spectra against spectralVotes: 0GitHub stars: 16
- Cascade Search Strategy For Peptide IdentificationUse when use this strategy when analyzing tandem mass spectrometry dataVotes: 0GitHub stars: 16
- Cascade Search Strategy ImplementationUse when when performing open modification spectral library searchesVotes: 0GitHub stars: 16
- Categorical Ion Status AggregationUse when after running qc_summary() on a filtered mpactr object whenVotes: 0GitHub stars: 16
- Categorical Numerical Feature Concatenation For Graphs'Use when when preparing heterogeneous column-metadata inputs for a graphVotes: 0GitHub stars: 16
- Ccs Bias QuantificationUse when you have IM-MS lipidomics data acquired on samples spiked withVotes: 0GitHub stars: 16
- Ccs Calibration Polynomial FittingUse when you have acquired tunemix or reference standard data in ionVotes: 0GitHub stars: 16
- Ccs Calibration Tunemix ExecutionUse when you have positive-mode tune mix reference data (e.g., example_tune_pos.h5)Votes: 0GitHub stars: 16
- Ccs Library Format ParsingUse when when you have received or cloned a CCS reference library (suchVotes: 0GitHub stars: 16
- Ccs Prediction Model ApplicationUse when you have structural input data (SMILES or molecular geometryVotes: 0GitHub stars: 16
- Ccs Prediction Model DesignUse when you have a dataset of molecules with known or reference CCSVotes: 0GitHub stars: 16
- Ccs Prediction Model TrainingUse when you have a dataset of SMILES strings with corresponding experimentalVotes: 0GitHub stars: 16
- Ccs Reference Data ExtractionUse when you have obtained or need to prepare a DTCCS_N2 reference libraryVotes: 0GitHub stars: 16
- Ccs Value Assignment From StandardsUse when you have TWIM-MS experimental data with arrival/drift timesVotes: 0GitHub stars: 16
- Cdf File Format Parsing'Use when when you have multiple CDF files from mass spectrometry imagingVotes: 0GitHub stars: 16
- Ce Ms Data Import And ParsingUse when you have raw CE-MS instrument output in mzML or netCDF formatVotes: 0GitHub stars: 16
- Ce Ms Eof Marker IdentificationUse when when processing CE-MS test files and you need to identify andVotes: 0GitHub stars: 16
- Ce Ms Migration Time MeasurementUse when when processing raw CE-MS data and need to establish a baselineVotes: 0GitHub stars: 16
- Ce Ms Migration Time To Mobility TransformationUse when your CE-MS dataset exhibits migration time drift between runsVotes: 0GitHub stars: 16
- Cell Type Protein Profiling IntegrationUse when you have co-registered IMC (protein imaging mass cytometry)Votes: 0GitHub stars: 16
- Centered Log Ratio NormalizationUse when apply CLR normalization when you have count-based microbiomeVotes: 0GitHub stars: 16
- Centroided Ms Feature DetectionUse when you have vendor-independent centroided mzML files from data-dependentVotes: 0GitHub stars: 16
- Centroided Peak Extraction From HrmsUse when you have centroided data-dependent acquisition (DDA/ddMS2) mzMLVotes: 0GitHub stars: 16
- Changelog Maintenance And DocumentationUse when you have added or modified user-facing parameters to a modelVotes: 0GitHub stars: 16
- Charge State Determination And AssignmentUse when when analyzing high-resolution mass spectrometry data from natural-abundanceVotes: 0GitHub stars: 16
- Charge State Specific Peak MatchingUse when you have peak-picked features with m/z, drift_time, retention_time,Votes: 0GitHub stars: 16
- Checkpoint Selection Based On Validation MetricUse when training neural networks on MS/MS spectra (or similar scientificVotes: 0GitHub stars: 16
- Chemical Annotation Confidence AssessmentUse when when you have received chemical annotations from GNPS spectralVotes: 0GitHub stars: 16
- Chemical Annotation IntegrationUse when after training a tandem mass spectrometry embedding model (suchVotes: 0GitHub stars: 16
- Chemical Annotation Matrix ConstructionUse when you have selected a subset of public tandem MS files from ReDU/MassIVEVotes: 0GitHub stars: 16
- Chemical Class Assignment ClassyfireUse when you have computed low-dimensional embeddings (e.g., t-SNE coordinates)Votes: 0GitHub stars: 16
- Chemical Class MappingUse when you have a GNPS molecular network (GML or GraphML format) andVotes: 0GitHub stars: 16
- Chemical Class Metadata IntegrationUse when you have generated a GNPS molecular network (classical or feature-basedVotes: 0GitHub stars: 16
- Chemical Class Node MappingUse when you have a GNPS mass spectral molecular network (in graphmlVotes: 0GitHub stars: 16
- Chemical Class Novelty DetectionUse when when you have CANOPUS chemical class predictions for your samplesVotes: 0GitHub stars: 16
- Chemical Classification Scheme ValidationUse when you have structural annotations from in silico tools (SIRIUS,Votes: 0GitHub stars: 16
- Chemical Coverage OptimizationUse when your LC-MS feature table is incomplete or has low chemical coverageVotes: 0GitHub stars: 16
- Chemical Database Query And MatchingUse when when you have mass-to-charge (m/z) values from mass spectrometryVotes: 0GitHub stars: 16
- Chemical Database Querying And RetrievalUse when you have BioTransformer-predicted metabolite structures (inVotes: 0GitHub stars: 16
- Chemical Formula Annotation Mapping'Use when you have processed MSI peak data (in rMSIproc format) and needVotes: 0GitHub stars: 16
- Chemical Formula Deduplication Across DatabasesUse when you have retrieved chemical formulae and metadata from two orVotes: 0GitHub stars: 16
- Chemical Formula EnumerationUse when you have an unknown MS/MS spectrum with a measured precursorVotes: 0GitHub stars: 16
- Chemical Formula Extraction And FilteringUse when when you have a loaded metabolite database (e.g., hmdb_compounds.pVotes: 0GitHub stars: 16
- Chemical Formula ManipulationUse when when you have a parent drug's raw chemical formula and needVotes: 0GitHub stars: 16
- Chemical Formula Ranking EvaluationUse when after running formula inference on a benchmark dataset withVotes: 0GitHub stars: 16
- Chemical Formula RepresentationUse when you need to feed chemical formulas into a neural network-basedVotes: 0GitHub stars: 16
- Chemical Formula Subformula ClassificationUse when you have tandem mass spectra with known molecular structuresVotes: 0GitHub stars: 16
- Chemical Formula TokenizationUse when you have collections of chemical formulae (e.g., from SIRIUSVotes: 0GitHub stars: 16
- Chemical Fragmentation Event TrackingUse when when running a ViMMS Environment simulation with save_eval flagVotes: 0GitHub stars: 16