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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Ci Cd Workflow MonitoringUse when when you need to verify that a continuous integration pipelineVotes: 0GitHub stars: 16
- Ci Cd Workflow TriggeringUse when you need to verify that a GitHub Actions workflow (such as dev_build_release.yml)Votes: 0GitHub stars: 16
- Circular Dependency Avoidance In Method DesignUse when you are implementing multiple accessor methods on a backendVotes: 0GitHub stars: 16
- Class Conditional Calibration MappingUse when you have TWIM-MS experimental data (arrival times and ion mobilityVotes: 0GitHub stars: 16
- Class Imbalance Downsampling Ratio AdjustmentUse when after generating cross-spectrum negative examples via precursorVotes: 0GitHub stars: 16
- Class Imbalance Mitigation Via NormalizationUse when preparing training batches for a neural network classifier onVotes: 0GitHub stars: 16
- Class Specific Ccs CalculationUse when when you have multi-omic TWIM-MS data (raw or processed arrival-timeVotes: 0GitHub stars: 16
- Class Specific Modification Rule ApplicationUse when after identifying putative BGC-encoded precursor peptides fromVotes: 0GitHub stars: 16
- Class Stratified Calibration Model ApplicationUse when you have a feature table with assigned biomolecular class labelsVotes: 0GitHub stars: 16
- Classification Algorithm Tuning ValidationUse when you have labeled training data (e.g., pqm_development with 500Votes: 0GitHub stars: 16
- Classification Metric VisualizationUse when after training or evaluating a classification model (e.g., aVotes: 0GitHub stars: 16
- Classification Model Performance EvaluationUse when after fitting and optimizing a MB-PLS model on training data,Votes: 0GitHub stars: 16
- Classification Performance EvaluationUse when after running inference on test mass spectrometry spectra withVotes: 0GitHub stars: 16
- Classification Workflow Parameter TogglingUse when gNPS has stopped supplying ClassyFire ontology information forVotes: 0GitHub stars: 16
- Classyfire Batch Database QueryingUse when you have a GNPS DBResult file with InChIKey identifiers butVotes: 0GitHub stars: 16
- Cli Application Invocation With File Io ManagementUse when when you have vendor mass spectrometry raw files (e.g., .rawVotes: 0GitHub stars: 16
- Cli Invocation With File Path ArgumentsUse when you have vendor raw mass spectrometry data files (e.g., .raw,Votes: 0GitHub stars: 16
- Cloud Compatible File OutputUse when after feature clustering and drift correction (Gravity and BlueshiftVotes: 0GitHub stars: 16
- Cloud Hosted Computational ChemistryUse when you have a curated dataset of ≤10,000 molecular structures withVotes: 0GitHub stars: 16
- Cluster Assignment MappingUse when after density-based clustering (e.g., DBSCAN) has been performedVotes: 0GitHub stars: 16
- Cluster Based Candidate PrioritizationUse when after mass-to-charge matching has produced a large table ofVotes: 0GitHub stars: 16
- Cluster Statistics IntegrationUse when after peak clustering has been performed on aligned GCIMS samplesVotes: 0GitHub stars: 16
- Clustered Peak Output FormattingUse when after peak clustering has been completed in pyINETA (i.Votes: 0GitHub stars: 16
- Clustering Metrics ComputationUse when when you have executed multiple clustering tools on the sameVotes: 0GitHub stars: 16
- Clustering Solution Comparison MetricsUse when you have applied two different clustering or dendrogram-flatteningVotes: 0GitHub stars: 16
- Clustering Tool OrchestrationUse when you have raw tandem MS metabolomics data (in mzML or MGF format)Votes: 0GitHub stars: 16
- Cnn Architecture Design For Spectral DataUse when when you have mass-spectrometry data (m/z and intensity pairsVotes: 0GitHub stars: 16
- Cnn Inference On Metabolomics DataUse when you have LC-MS feature tables (with m/z and retention time columns)Votes: 0GitHub stars: 16
- Cnn Inference On Spectral DataUse when you have preprocessed MS/MS spectral data (normalized peak intensitiesVotes: 0GitHub stars: 16
- Cnn Spectral Feature ExtractionUse when you have preprocessed 1D NMR spectra (¹H and/or ¹³C) and needVotes: 0GitHub stars: 16
- Cnn Transformer Hybrid Architecture DesignUse when when you need to detect and classify peaks in LC-MS regionsVotes: 0GitHub stars: 16
- Code Repository AnalysisUse when you have a published research article describing a new FT-ICRVotes: 0GitHub stars: 16
- Coefficient Of Variation ComparisonUse when after normalization of a metabolomic feature matrix but beforeVotes: 0GitHub stars: 16
- Coefficient Of Variation ComputationUse when you have loaded raw NMR or MS metabolomic abundance data intoVotes: 0GitHub stars: 16
- Coefficient Of Variation Threshold Analysis'Use when you have per-feature CV values from quality control analysisVotes: 0GitHub stars: 16
- Coeluting Compound ResolutionUse when analyzing complex GC-MS mixtures where two or more chemicalVotes: 0GitHub stars: 16
- Coeluting Ion SeparationUse when raw GC-MS data (netCDF or mzML format) exhibits overlappingVotes: 0GitHub stars: 16
- Cohen Kappa Inter Rater ReliabilityUse when when you have two independent predictions of categorical outcomesVotes: 0GitHub stars: 16
- Cohort Performance ReportingUse when you have NMR metabolite measurements from peripheral blood samplesVotes: 0GitHub stars: 16
- Cohort Stratified Metabolic Performance AnalysisUse when when you have uploaded a pre-analytical data table containingVotes: 0GitHub stars: 16
- Col Mode Augmentation Pipeline ImplementationUse when when you have preprocessed mass spectrometry imaging (MSI) ionVotes: 0GitHub stars: 16
- Collision Cross Section Bias EstimationUse when when you have IM-MS lipidomics data spiked with U13C labeledVotes: 0GitHub stars: 16
- Collision Cross Section Bias QuantificationUse when you have ion mobility-mass spectrometry lipidomics data fromVotes: 0GitHub stars: 16
- Collision Cross Section CalculationUse when you have raw or processed arrival-time data from a traveling-waveVotes: 0GitHub stars: 16
- Collision Cross Section Calibration CcsUse when when you have acquired ion mobility–mass spectrometry data (driftVotes: 0GitHub stars: 16
- Collision Cross Section CalibrationUse when you have LC-IMS-MS/MS data with drift_time measurements andVotes: 0GitHub stars: 16
- Collision Cross Section ComputationUse when you have a set of molecular structures in SMILES format thatVotes: 0GitHub stars: 16
- Collision Cross Section Matching And AnnotationUse when when you have LC-IM-MS/MS data with measured collision crossVotes: 0GitHub stars: 16
- Collision Cross Section Measurement Quality ControlUse when you have IM-MS lipidomics data from samples spiked with U13C-labeledVotes: 0GitHub stars: 16
- Collision Cross Section Model ValidationUse when after applying deimos.calibration.tunemix() to positive-modeVotes: 0GitHub stars: 16