All authors
Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Collision Cross Section Prediction EvaluationUse when you have a pre-trained GNN CCS prediction model and need toVotes: 0GitHub stars: 16
- Collision Cross Section PredictionUse when you have molecular structures (SMILES or SDF format) and needVotes: 0GitHub stars: 16
- Collision Energy Optimization For FragmentationUse when when you have N-Me derivatized unsaturated sterol lipid structuresVotes: 0GitHub stars: 16
- Colocalization Coefficient ComputationUse when you have two co-registered LA-ICP-MS element channel imagesVotes: 0GitHub stars: 16
- Color Jitter Application ImagingUse when preparing ion image data for representation learning in massVotes: 0GitHub stars: 16
- Color Palette Application GreensUse when when rendering a treemap of qc_summary() output showing ionVotes: 0GitHub stars: 16
- Column Header Keyword MatchingUse when importing a new delimited data file (CSV, semicolon-separated,Votes: 0GitHub stars: 16
- Column Name Variant MatchingUse when when processing mwTab metabolomics data files with variableVotes: 0GitHub stars: 16
- Combined Table Extraction And InspectionUse when after constructing a metabCombiner object by grouping featuresVotes: 0GitHub stars: 16
- Command Line Interface Configuration And AutomationUse when you have a batch of raw LC-IMS-MS/MS data in mzML or mzML.Votes: 0GitHub stars: 16
- Command Line Interface InvocationUse when when you have installed a Python package and need to verifyVotes: 0GitHub stars: 16
- Command Line Interface TestingUse when after installing a Python package or before running a computationalVotes: 0GitHub stars: 16
- Command Line Software Installation From GithubUse when you need to install a Python package that is distributed viaVotes: 0GitHub stars: 16
- Command Line Tool ExecutionUse when you have tandem MS/MS spectrum data in standard peak file formatsVotes: 0GitHub stars: 16
- Command Line Tool InvocationUse when you need to bootstrap a tool workflow by generating a version-Votes: 0GitHub stars: 16
- Comparative Algorithm Benchmarking For Peak Detection'Use when you have developed or adapted a peak detection method for chromatography–massVotes: 0GitHub stars: 16
- Comparative Classifier Performance AssessmentUse when you have a labeled peak quality dataset (development set withVotes: 0GitHub stars: 16
- Comparative Machine Learning BenchmarkingUse when you have developed a new machine learning model for predictingVotes: 0GitHub stars: 16
- Comparative Omics Report GenerationUse when when you have feature lists (in CSV format) from two or moreVotes: 0GitHub stars: 16
- Comparative Performance Evaluation Across Methods'Use when when you have developed a new spectral similarity scoring methodVotes: 0GitHub stars: 16
- Comparative Performance Profiling'Use when when you have implemented a new or optimized mass spectrometryVotes: 0GitHub stars: 16
- Component Candidate Prioritization FilteringUse when after generateComponents has assigned candidate TP featuresVotes: 0GitHub stars: 16
- Composite Map Data Structure ConstructionUse when after mass track extraction and alignment across samples, whenVotes: 0GitHub stars: 16
- Composite Mass Track Assembly And Peak DetectionUse when after mass tracks have been aligned across all samples intoVotes: 0GitHub stars: 16
- Composite Mass Track ConstructionUse when when processing a multi-sample LC-MS metabolomics project afterVotes: 0GitHub stars: 16
- Composite Mass Track Summation Across SamplesUse when after mass tracks have been aligned across samples into a MassGridVotes: 0GitHub stars: 16
- Composite Spectra AnalysisUse when your untargeted LC/HRMS dataset contains Data-Independent AcquisitionVotes: 0GitHub stars: 16
- Composite Spectra Assembly From Fragment IonsUse when you have DDA raw mass spectrometry data (mzML, mzXML, or netCDFVotes: 0GitHub stars: 16
- Compound Abundance Quantification From FlowUse when you have an NMR mixture spectrum (1D or 2D) and a library ofVotes: 0GitHub stars: 16
- Compound Annotation Confidence AssessmentUse when you have MS/MS spectra matched to a reference library via bothVotes: 0GitHub stars: 16
- Compound Area Aggregation Across SamplesUse when you have a GC-MS dataset with multiple sample files (e.g., Std_soln_00,Votes: 0GitHub stars: 16
- Compound Candidate RankingUse when after compound database dereplication has produced candidateVotes: 0GitHub stars: 16
- Compound Class Annotation ParsingUse when after submitting a fingerprint or spectrum query to the CANOPUSVotes: 0GitHub stars: 16
- Compound Class Assignment From Molecular FormulaUse when after peaks have been filtered (by m/z, isotopic presence, andVotes: 0GitHub stars: 16
- Compound Class Prediction From SpectraUse when you have an unknown mass spectrometry spectrum (acquired experimentallyVotes: 0GitHub stars: 16
- Compound Clustering From Inadequate SpectraUse when after peak picking has identified individual signals in an INADEQUATEVotes: 0GitHub stars: 16
- Compound Count VerificationUse when after modifying a FIDDLE configuration file to add or removeVotes: 0GitHub stars: 16
- Compound Data Subsetting By ThresholdUse when you have a GC-MS dataset with a Match.Factor column (or equivalentVotes: 0GitHub stars: 16
- Compound Database Lookup And CurationUse when after feature extraction from LC–MS raw data (via XCMS, MS-Dial,Votes: 0GitHub stars: 16
- Compound Database MatchingUse when you have MS2 .mzML spectral data from untargeted metabolomicsVotes: 0GitHub stars: 16
- Compound Ground Truth MatchingUse when when you have pre-computed embeddings for query and referenceVotes: 0GitHub stars: 16
- Compound Identification From Ms DataUse when you have raw GC-MS or LC-MS data in vendor format (NetCDF, .raw,Votes: 0GitHub stars: 16
- Compound Identification From Ms MsUse when you have LC-MS/MS data in mgf format and a custom spectral databaseVotes: 0GitHub stars: 16
- Compound Identification Ranking EvaluationUse when after training a FlavorFormer model end-to-end with weightedVotes: 0GitHub stars: 16
- Compound Identification ScoringUse when you have preprocessed MS/MS spectra (noise-filtered, normalized)Votes: 0GitHub stars: 16
- Compound Identification ValidationUse when when you have an unknown MS/MS spectrum (in .Votes: 0GitHub stars: 16
- Compound Identifier Cross Referencing'Use when when you have prepared raw mass spectrometry transition dataVotes: 0GitHub stars: 16
- Compound Identifier LookupUse when you have an experimental MS/MS spectrum (m/z and intensity pairsVotes: 0GitHub stars: 16
- Compound Identifier Mapping CurationUse when when integrating MS/MS spectra from multiple source repositoriesVotes: 0GitHub stars: 16
- Compound Identifier MappingUse when after filtering a peak table to remove mispicked ions, groupVotes: 0GitHub stars: 16