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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Covariance Matrix ComputationUse when after normalization (Step 7) is complete and you have a cleanVotes: 0GitHub stars: 16
- Coverage Accuracy Metric ComputationUse when you have two sets of lipid annotations—one from baseline spectralVotes: 0GitHub stars: 16
- Cpu Gpu Performance BenchmarkingUse when you have implemented both CPU and GPU versions of a spectralVotes: 0GitHub stars: 16
- Cross Assay Feature Linkage AnalysisUse when after identifying statistically significant features withinVotes: 0GitHub stars: 16
- Cross Assay Feature LinkageUse when when you have structural clusters from multiple LC-MS assaysVotes: 0GitHub stars: 16
- Cross Database Entity ReconciliationUse when you have chemical entity records scattered across two or moreVotes: 0GitHub stars: 16
- Cross Database Structural Homology MatchingUse when when you have antiSMASH-predicted BGCs and wish to link themVotes: 0GitHub stars: 16
- Cross Dataset Entry FilteringUse when you have received MSBERT-preprocessed spectral data from GNPS,Votes: 0GitHub stars: 16
- Cross Dataset Feature Correspondence MappingUse when you have two or more nontargeted LCMS feature tables from theVotes: 0GitHub stars: 16
- Cross Dataset Feature MatchingUse when you have two or more feature tables in HDF5 format with detectedVotes: 0GitHub stars: 16
- Cross Dataset Generalization AssessmentUse when you have a pre-trained MS/MS spectral embedding model evaluatedVotes: 0GitHub stars: 16
- Cross Dataset Score Distribution Comparison'Use when when you have applied multiple scoring functions (e.g., strainVotes: 0GitHub stars: 16
- Cross Domain Metadata HarmonizationUse when when you have submitted the same MS/MS spectrum query to multipleVotes: 0GitHub stars: 16
- Cross Domain Metadata IntegrationUse when when you have conducted batch MS/MS searches across one or moreVotes: 0GitHub stars: 16
- Cross Domain Token MappingUse when when building a unified sequence model (e.Votes: 0GitHub stars: 16
- Cross Instrument Data HarmonizationUse when you have mass spectrometry spectral data from multiple instrumentVotes: 0GitHub stars: 16
- Cross Language Data Format InteroperabilityUse when you have mass spectrometry data (LC–MS/MS, ion mobility, DIA)Votes: 0GitHub stars: 16
- Cross Language Function Invocation And ValidationUse when your R-based Spectra analysis workflow requires a specific massVotes: 0GitHub stars: 16
- Cross Language Implementation CompatibilityUse when when a new file format specification has multiple language implementationsVotes: 0GitHub stars: 16
- Cross Language Interface DesignUse when when you have domain-specific functionality (e.g., spectralVotes: 0GitHub stars: 16
- Cross Language Interface ImplementationUse when you have a mature R analysis pipeline (e.g., using Spectra objectsVotes: 0GitHub stars: 16
- Cross Method Chromatographic ScalabilityUse when you have a pretrained RT-Transformer model checkpoint from aVotes: 0GitHub stars: 16
- Cross Method Rt CalibrationUse when when you have predicted retention times from a DNN model trainedVotes: 0GitHub stars: 16
- Cross Omics Strain MappingUse when when you have paired genomics (AntiSMASH BGC annotations) andVotes: 0GitHub stars: 16
- Cross Platform Software Capability MappingUse when you are designing a new tool for FT-ICR MS analysis (or similarVotes: 0GitHub stars: 16
- Cross Reference Publication LinkingUse when when cataloging a suite of related bioinformatics tools or webVotes: 0GitHub stars: 16
- Cross Sample Alignment Matrix ConstructionUse when you have already generated per-sample MS2 fingerprints (countVotes: 0GitHub stars: 16
- Cross Sample Feature AlignmentUse when you have run mass detection and chromatogram building independentlyVotes: 0GitHub stars: 16
- Cross Sample Feature MatchingUse when you have detected feature tables from two or more LC-IMS-MS/MSVotes: 0GitHub stars: 16
- Cross Sample Metabolite MatchingUse when after feature extraction (MS1 peak picking, MS2 recognition,Votes: 0GitHub stars: 16
- Cross Script Consistency VerificationUse when when a deep learning pipeline processes mass spectrometry spectraVotes: 0GitHub stars: 16
- Cross Software Feature MatchingUse when you have collected feature lists in CSV format from two or moreVotes: 0GitHub stars: 16
- Cross Spectrum Negative Generation Within Mz WindowUse when when preparing augmented training data for a Siamese rescoreVotes: 0GitHub stars: 16
- Cross Spectrum Negative MiningUse when when training a Siamese architecture rescore model for MS/MS-basedVotes: 0GitHub stars: 16
- Cross Split Metric Aggregation'Use when when you have a pre-trained model and need to report stable,Votes: 0GitHub stars: 16
- Cross Tool Performance ComparisonUse when when you have raw tandem MS metabolomics data in vendor formatsVotes: 0GitHub stars: 16
- Cross Tool Result Concordance AnalysisUse when you have executed multiple NPDtools database search pipelinesVotes: 0GitHub stars: 16
- Cross Validation Workflow ExecutionUse when you have paired microbiome (16S rRNA/metagenomic) and metabolomeVotes: 0GitHub stars: 16
- Cross View Similarity ScoringUse when you have an experimental mass spectrum (query) and a set ofVotes: 0GitHub stars: 16
- Cross Workflow Format TranslationUse when you have downloaded a GNPS archive from either GNPS1 (https://gnps.ucsd.edu)Votes: 0GitHub stars: 16
- Csv Delimiter Parsing And ConfigurationUse when when uploading a new mass spectrometry data file to Punc'dataVotes: 0GitHub stars: 16
- Csv File Parsing And Peak IndexingUse when you have a metabolomics dataset (CSV format) containing detectedVotes: 0GitHub stars: 16
- Csv Format Specification Compliance'Use when after feature extraction or feature alignment when you haveVotes: 0GitHub stars: 16
- Csv Serialization For Mass SpectrometryUse when you have generated or curated a lipid spectral library (withVotes: 0GitHub stars: 16
- Csv To Dictionary ConversionUse when you have a CSV file containing molecule definitions (chemicalVotes: 0GitHub stars: 16
- Csv Xlsx File Conversion And ExportUse when when you have validated mass spectrometry transition data (precursorVotes: 0GitHub stars: 16
- Cumulative Distribution Visualization'Use when when you have per-feature quality metrics (such as CV valuesVotes: 0GitHub stars: 16
- Custom Data Schema MappingUse when a practitioner has pre-computed features from an external feature-findingVotes: 0GitHub stars: 16
- Custom Database SearchingUse when when you have LC-MS/MS data in Mascot Generic Format (mgf) filesVotes: 0GitHub stars: 16
- Custom File Wrapper Class ImplementationUse when when you have mass spectrometry data stored in a database orVotes: 0GitHub stars: 16