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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Custom Mzml Index Pattern DefinitionUse when your mzML file contains custom or non-standard spectrum indexVotes: 0GitHub stars: 16
- Cytoscape Edge Node File FormattingUse when after computing pairwise mass-difference transformations betweenVotes: 0GitHub stars: 16
- D Ratio Threshold FilteringUse when after signal drift correction (step 4) has computed per-featureVotes: 0GitHub stars: 16
- Dashboard Data Loading And ValidationUse when after generating a dashboard_data.json file from the msFeaSTVotes: 0GitHub stars: 16
- Dashboard Session Initialization VerificationUse when after loading a specXplore session data object (saved .Votes: 0GitHub stars: 16
- Data Augmentation MetabolomicsUse when you have preprocessed and normalized ROI feature data extractedVotes: 0GitHub stars: 16
- Data Column Recognition And MappingUse when when uploading a delimited CSV or similar tabular file to Punc'dataVotes: 0GitHub stars: 16
- Data Dependent Acquisition Controller ImplementationUse when you have a conceptual MS/MS fragmentation strategy (e.Votes: 0GitHub stars: 16
- Data Driven Similarity Layer ImplementationUse when you have untargeted metabolomics mass spectrometry data (MS2Votes: 0GitHub stars: 16
- Data Format Compliance CheckingUse when mSMetaEnhancer fetches metadata from external services (CIR,Votes: 0GitHub stars: 16
- Data Format Conversion Csv TsvUse when after completing data merging, cleanup, and batch correctionVotes: 0GitHub stars: 16
- Data Format Conversion To Application SchemaUse when you have m/z peak lists (positive and negative mode) and sampleVotes: 0GitHub stars: 16
- Data Format Validation And Integrity CheckingUse when after converting raw Bruker .d/.baf or other proprietary massVotes: 0GitHub stars: 16
- Data Handoff Pipeline Orchestration'Use when you have raw MS files (with associated metadata: filename,Votes: 0GitHub stars: 16
- Data Ingestion Pipeline DesignUse when when building a platform that must accept raw MS data filesVotes: 0GitHub stars: 16
- Data Integrity AssessmentUse when immediately after importing raw mass spectrometry data fromVotes: 0GitHub stars: 16
- Data Integrity VerificationUse when after applying matchms metadata cleaning tools to normalizeVotes: 0GitHub stars: 16
- Data Interchange Format ConversionUse when you have deconvoluted or processed MS/MS spectra from SWATH-MSVotes: 0GitHub stars: 16
- Data Marshalling And Type ConversionUse when you have Spectra::Spectra objects in R and need to apply PythonVotes: 0GitHub stars: 16
- Data Normalization In Mass SpectrometryUse when you have raw or partially processed metabolomics data (mzML/mzXMLVotes: 0GitHub stars: 16
- Data Pipeline Module Design And IntegrationUse when you have raw spectroscopic datasets from heterogeneous sourcesVotes: 0GitHub stars: 16
- Data Quality Assessment From Molecular DescriptorsUse when processing spectral datasets from open mass spectra librariesVotes: 0GitHub stars: 16
- Data Quality Validation LipidomicsUse when after loading and parsing raw MRM export files (TSV, CSV, orVotes: 0GitHub stars: 16
- Data Serialization Format InteroperabilityUse when you have a new or draft file format specification (e.g., mzPeak)Votes: 0GitHub stars: 16
- Data Structure Design For Spectral SearchesUse when you have raw GC-MS output in CSV format with columns Component.RT,Votes: 0GitHub stars: 16
- Data Structure ValidationUse when after converting or filtering objects (e.g., transformationVotes: 0GitHub stars: 16
- Data Summarization And TabulationUse when after obtaining structural clusters from the MAMSI frameworkVotes: 0GitHub stars: 16
- Data Type Classification Schema DesignUse when building or auditing a multi-instrument MS data processing systemVotes: 0GitHub stars: 16
- Data Type Constraint VerificationUse when when ingesting or updating MassBank records in plain-text orVotes: 0GitHub stars: 16
- Data Visualization From Tabulated ResultsUse when after executing a MassQL query that returns a tabulated resultsVotes: 0GitHub stars: 16
- Database Record Conditional Update'Use when when processing mass spectrometry spectral records from a databaseVotes: 0GitHub stars: 16
- Database Schema Design And ImplementationUse when when you have an mzML file that you want to store persistentlyVotes: 0GitHub stars: 16
- Database Schema Design For Spectral DataUse when you have MS/MS spectral library data currently stored in file-basedVotes: 0GitHub stars: 16
- Database Similarity ScoringUse when you have one or more MS/MS spectra (query spectra in mzML, mzXML,Votes: 0GitHub stars: 16
- Dataframe And Numericlist ManipulationUse when you are implementing a new MsBackend subclass and need to storeVotes: 0GitHub stars: 16
- Dataframe Construction And Column MergingUse when when implementing a new MsBackend subclass and need to returnVotes: 0GitHub stars: 16
- Dataframe Construction From Backend SourcesUse when when implementing a new MsBackend subclass that stores onlyVotes: 0GitHub stars: 16
- Dataframe Lazy Loading ComparisonUse when when designing or optimizing an MsBackend implementation (orVotes: 0GitHub stars: 16
- Dataframe Plotting Interface Design'Use when when building a scientific visualization library that mustVotes: 0GitHub stars: 16
- Dataset Object Serialization And DeserializationUse when you have mass spectrometry data arriving through heterogeneousVotes: 0GitHub stars: 16
- Dataset Preprocessing And FilteringUse when when you have a raw GNPS or other spectral library dataset withVotes: 0GitHub stars: 16
- Dataset Size Threshold EnforcementUse when when you have partitioned public MS/MS files from MassIVE usingVotes: 0GitHub stars: 16
- Dataset Storage Interface ArchitectureUse when you have NMR dataset metadata (cache-file flag, total pointVotes: 0GitHub stars: 16
- Dataset Train Test Split ValidationUse when when preparing MS/MS spectra for deep learning model trainingVotes: 0GitHub stars: 16
- Datatype Validation Helper MethodsUse when when implementing a custom MsBackend subclass and need to verifyVotes: 0GitHub stars: 16
- Dda Acquisition Data HandlingUse when you have raw or processed LC-MS/MS data from DDA mode acquisitionsVotes: 0GitHub stars: 16
- Dda Fragmentation Strategy ParameterizationUse when you have a virtual chemical mixture (MS1 peaks) and need toVotes: 0GitHub stars: 16
- Dda Fragmentation Strategy SimulationUse when you have real mzML LC-MS/MS data (e.g., from a Beer sample orVotes: 0GitHub stars: 16
- Dda Mode Metabolomics Data ProcessingUse when when you have LC-MS/MS data collected in DDA mode and suspectVotes: 0GitHub stars: 16
- Dda Precursor Fragment Ion GroupingUse when when you have raw DDA mass spectrometry data (mzML, mzXML, orVotes: 0GitHub stars: 16