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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Batch Spectrum Quality ControlUse when when ingesting spectra from multiple open mass spectrometryVotes: 0GitHub stars: 16
- Batch Timing AnalysisUse when when evaluating whether a new or candidate mass spectrometryVotes: 0GitHub stars: 16
- Batch Wise Normalization ApplicationUse when when processing a SummarizedExperiment containing metabolomicsVotes: 0GitHub stars: 16
- Bayesian Annotation Probability InferenceUse when you have LC/MS feature data (m/z, retention time, intensity)Votes: 0GitHub stars: 16
- Bayesian Meta Learning Chromatographic ProjectionUse when you have experimental retention times (RTs) for a small setVotes: 0GitHub stars: 16
- Bayesian Model Update With Experimental DataUse when you have completed one or more LC-MS gradient runs, extractedVotes: 0GitHub stars: 16
- Bayesian Optimization Acquisition Function SelectionUse when after fitting a Gaussian Process regression model to prior LC-MSVotes: 0GitHub stars: 16
- Beam Search Decoding OptimizationUse when using Casanovo for de novo peptide sequencing on high-stakesVotes: 0GitHub stars: 16
- Benchmark Dataset Generation From Reference MetabolitesUse when you have a set of centroided mzML files from LC-HRMS analysis,Votes: 0GitHub stars: 16
- Benchmark Harness ExecutionUse when you have post-processed clustering results from multiple toolsVotes: 0GitHub stars: 16
- Benchmark Table Generation And ReportingUse when when you need to quantify and document the computational costVotes: 0GitHub stars: 16
- Benchmarking And Comparative Performance EvaluationUse when you have trained a new machine learning model for chemical formulaVotes: 0GitHub stars: 16
- Bgc Identification From Genomic SequenceUse when you have assembled genome sequences (contigs or scaffolds inVotes: 0GitHub stars: 16
- Bgc Mf Link ScoringUse when you have preprocessed GCF-MF link pairs from paired genomics–metabolomicsVotes: 0GitHub stars: 16
- Bgc Spectrum Iokr Score ComputationUse when when you have a collection of microbial genomes with predictedVotes: 0GitHub stars: 16
- Bgc Spectrum Ranking By Kernel Similarity'Use when you have: (1) a trained IOKR model mapping from spectrum kernelsVotes: 0GitHub stars: 16
- Bi Encoder Cross Encoder Architecture DesignUse when you have paired spectrum-compound reference data and need toVotes: 0GitHub stars: 16
- Binary Additive Flag EncodingUse when constructing HPLC column feature vectors from raw metadata thatVotes: 0GitHub stars: 16
- Binary And Xml Data DeserializationUse when you have raw LC-MS data in .mzML (XML-based) or Thermo .rawVotes: 0GitHub stars: 16
- Binary Classification Model TrainingUse when you have curated a labeled dataset of MS/MS spectra annotatedVotes: 0GitHub stars: 16
- Binary Cross Entropy Loss OptimizationUse when when you have a pretrained spectrum encoder (TCN) and need toVotes: 0GitHub stars: 16
- Binary Data Base64 EncodingUse when when converting simulated or real LC/GC-MS spectral data (m/z–retention-timeVotes: 0GitHub stars: 16
- Binary Data Integrity VerificationUse when after implementing a lossless compression–decompression cycleVotes: 0GitHub stars: 16
- Binary File Format ParsingUse when you encounter a proprietary or undocumented binary file (e.Votes: 0GitHub stars: 16
- Binary Format Specification ImplementationUse when you have a compressed file format (e.g., igzip) with a customVotes: 0GitHub stars: 16
- Binary Representation GenerationUse when you have raw mass spectra data (MGF format with m/z/intensityVotes: 0GitHub stars: 16
- Binary Spectral Data ExtractionUse when you have parsed imzML XML metadata and loaded the correspondingVotes: 0GitHub stars: 16
- Bioactivity Score AggregationUse when when you have both (1) a molecular network graph from GNPS withVotes: 0GitHub stars: 16
- Bioassay Activity Data IntegrationUse when when you have (1) a molecular network graph from GNPS with nodeVotes: 0GitHub stars: 16
- Biobase Object SerializationUse when when you have raw peak table data from mass spectrometry orVotes: 0GitHub stars: 16
- Biochemical Annotation MappingUse when you have loaded MSI data into napari, defined one or more ROIsVotes: 0GitHub stars: 16
- Biochemical Relation Integration For AnnotationUse when when you have LC/MS feature data (m/z, retention time, intensity)Votes: 0GitHub stars: 16
- Biochemical Transformation MatchingUse when after you have detected and assigned molecular formulas to peaksVotes: 0GitHub stars: 16
- Bioconductor Backend Architecture Design'Use when you are building a new mass spectrometry data backend or storageVotes: 0GitHub stars: 16
- Bioconductor Data Import And HandlingUse when you have CE-MS test files archived in the msdata BioconductorVotes: 0GitHub stars: 16
- Bioconductor Object Structure InspectionUse when after constructing a SummarizedExperiment object from raw metabolomicsVotes: 0GitHub stars: 16
- Bioconductor Summarized Experiment Construction'Use when after successfully reading and validating a tab-delimited metabolomicsVotes: 0GitHub stars: 16
- Bioinformatic Object ConversionUse when when you have processed Cardinal MSI data (normalized peak intensities,Votes: 0GitHub stars: 16
- Biological Reactant Pair Mapping KeggUse when constructing or enriching a chemical formula database that mustVotes: 0GitHub stars: 16
- Biomolecular Class AnnotationUse when you have raw or processed TWIM-MS data with arrival time andVotes: 0GitHub stars: 16
- Biomolecular Class Ccs MappingUse when after biomolecular class labels have been assigned to featuresVotes: 0GitHub stars: 16
- Biomolecular Class Label AssignmentUse when you have raw or processed TWIM-MS data with arrival time andVotes: 0GitHub stars: 16
- Biosynthetic Gene Cluster Mining With Genomic DataUse when you have LC-MS/MS spectra (MGF, mzXML, mzML, or mzData format)Votes: 0GitHub stars: 16
- Biotransformation Candidate Integration With NetworkingUse when you have output from a biotransformation rules module (candidateVotes: 0GitHub stars: 16
- Biotransformation EnumerationUse when you have a known parent drug chemical formula and aim to predictVotes: 0GitHub stars: 16
- Biotransformation Prediction Across Microbiota ContextsUse when you have one or more small-molecule chemical structures (asVotes: 0GitHub stars: 16
- Biotransformation Rule Application To MetabolitesUse when you have untargeted metabolomics data with unknown or ambiguousVotes: 0GitHub stars: 16
- Bipartite Graph Maximum Weight Matching'Use when you have two MS/MS fragmentation spectra with fragment ionVotes: 0GitHub stars: 16
- Bipartite Network Node Edge AssemblyUse when after completing dereplication and cosine similarity clusteringVotes: 0GitHub stars: 16
- Blank Contamination FilteringUse when your peak table includes features flagged in blank control samplesVotes: 0GitHub stars: 16