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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Alignment Quality AssessmentUse when after retention time and m/z-based clustering have been appliedVotes: 0GitHub stars: 16
- Amino Acid Level Accuracy EvaluationUse when you have predicted peptide sequences from a de novo sequencingVotes: 0GitHub stars: 16
- Analog Search Result RoutingUse when after MS2Query has ranked and scored library matches againstVotes: 0GitHub stars: 16
- Analyte Discrimination Machine LearningUse when you have raw chromatography–mass spectrometry data (GC-MS orVotes: 0GitHub stars: 16
- Analyte Metadata Hierarchical IndexingUse when after applying a stringent Q-value quality filter (e.Votes: 0GitHub stars: 16
- Analytical Pipeline Feature DocumentationUse when you are evaluating a new or existing data analysis pipelineVotes: 0GitHub stars: 16
- Anchor Feature Pair SelectionUse when after completing feature m/z grouping and pairwise alignmentVotes: 0GitHub stars: 16
- Anndata Object AnnotationUse when after loading or merging spatial metabolomics data into an AnnDataVotes: 0GitHub stars: 16
- Anndata Object Initialization And StructuringUse when when you have imzML and accompanying ibd (ion binary data) filesVotes: 0GitHub stars: 16
- Anndata Object Integration And Metadata MappingUse when you have preprocessed and filtered ST and SM AnnData objectsVotes: 0GitHub stars: 16
- Annotaterc Function ParameterizationUse when you have LC–MS all-ion fragmentation chromatograms already processedVotes: 0GitHub stars: 16
- Annotation Benchmark Performance EvaluationUse when after running an end-to-end annotation workflow (matching, clustering,Votes: 0GitHub stars: 16
- Annotation Candidate Comparative ScoringUse when you have pseudo-MS/MS spectra from LC-MS all-ion fragmentationVotes: 0GitHub stars: 16
- Annotation Candidate Ranking Tp ScoreUse when after generating TP candidates from annotation algorithms (ann_compVotes: 0GitHub stars: 16
- Annotation Complexity ComparisonUse when you have MS imaging or LC-MS data with pre-annotated m/z valuesVotes: 0GitHub stars: 16
- Annotation Confidence AssessmentUse when after MS-FINDER in silico annotation has been executed on exportedVotes: 0GitHub stars: 16
- Annotation Confidence ScoringUse when after recursive annotation propagation has assigned metaboliteVotes: 0GitHub stars: 16
- Annotation Coverage Statistics ComputationUse when you have run MSMetaEnhancer's annotate_spectra() method on aVotes: 0GitHub stars: 16
- Annotation Object ManipulationUse when after completing metabolite annotation of LC-MS AIF featuresVotes: 0GitHub stars: 16
- Annotation Pipeline Data PreparationUse when when you have raw PubChem compound records or other public chemicalVotes: 0GitHub stars: 16
- Annotation Quality Filtering By Cosine SimilarityUse when you have in silico annotations (e.g. from GNPS, timaR, or SIRIUS)Votes: 0GitHub stars: 16
- Annotation Scoring And RankingUse when you have experimental mass spectra from untargeted metabolomicsVotes: 0GitHub stars: 16
- Annotation Table ConstructionUse when when you have access to multiple public metabolomics databasesVotes: 0GitHub stars: 16
- Annotation Table Quality ControlUse when after obtaining in silico annotations from SIRIUS (Zodiac/CosmicVotes: 0GitHub stars: 16
- Anova Feature Significance FilteringUse when you have a normalized LC-MS/MS metabolite abundance matrix (e.g.,Votes: 0GitHub stars: 16
- Apache Arrow Columnar Format ParsingUse when you have mzPeak files stored as Parquet tables within a ZIPVotes: 0GitHub stars: 16
- Api Adapter Layer DesignUse when when you have multiple mass spectrometry data formats (mzML,Votes: 0GitHub stars: 16
- Api Endpoint CommunicationUse when you have fingerprint or spectrum data that requires compound-classVotes: 0GitHub stars: 16
- Api Request Response HandlingUse when you have nuclear magnetic resonance (NMR) peak data (protonVotes: 0GitHub stars: 16
- Approximate Nearest Neighbor Index ConstructionUse when when you have a large collection of reference MS/MS spectraVotes: 0GitHub stars: 16
- Approximate Nearest Neighbor Indexing ConstructionUse when when you have a large spectral library (hundreds of thousandsVotes: 0GitHub stars: 16
- Approximate Nearest Neighbor Indexing For SpectraUse when when you have a large spectral library (hundreds of thousandsVotes: 0GitHub stars: 16
- Archive Extraction And File Mapping'Use when when you have downloaded a GNPS molecular networking job archiveVotes: 0GitHub stars: 16
- Area Integration From Detection OutputUse when you have region-of-interest (ROI) LC-MS data and a pre-trainedVotes: 0GitHub stars: 16
- Aromaticity Index ComputationUse when after molecular formula assignment from FT-ICR MS peaks andVotes: 0GitHub stars: 16
- Array Of Objects ConstructionUse when you have tabular experimental data (e.g., sample metadata, massVotes: 0GitHub stars: 16
- Arrival Time Based Class AssignmentUse when you have raw or processed TWIM-MS data with arrival time andVotes: 0GitHub stars: 16
- Arrival Time To Ccs ConversionUse when when you have raw TWIM-MS arrival-time data and need to transformVotes: 0GitHub stars: 16
- Arrival Time To Drift Time ConversionUse when when processing raw TWIM-MS experimental data that containsVotes: 0GitHub stars: 16
- Arrow Columnar Data DecodingUse when when reading mzPeak files or other Parquet-backed mass spectrometryVotes: 0GitHub stars: 16
- Arrow Table SerializationUse when you have loaded mzPeak spectrum or chromatogram metadata andVotes: 0GitHub stars: 16
- Arrow Tabular Data ReadingUse when when you have Parquet-encoded tabular data (e.Votes: 0GitHub stars: 16
- Artifact Removal In Ims DataUse when processing raw IM-MS data (UIMF or Agilent MassHunter .d format)Votes: 0GitHub stars: 16
- Assay Matrix FormattingUse when after generating a feature table via mzrtsim() containing simulatedVotes: 0GitHub stars: 16
- Assay Ratio Computation VerificationUse when after calling buildExperiment on metabolomics data to constructVotes: 0GitHub stars: 16
- Atom Bond Feature Importance RankingUse when you have a trained GNN model for molecular property predictionVotes: 0GitHub stars: 16
- Atom Feature Extraction ChemistryUse when you have canonicalized SMILES strings from a chemical databaseVotes: 0GitHub stars: 16
- Attention Mechanism For Spectral DecodingUse when when you have pretrained encoder-produced embeddings from MS/MSVotes: 0GitHub stars: 16
- Attention Mechanism ImplementationUse when you have imaging mass spectrometry (IMS) datasets with peakVotes: 0GitHub stars: 16
- Attention Mechanism ValidationUse when after instantiating a transformer encoder module for mass spectrometryVotes: 0GitHub stars: 16