Evaluate an OpenMed de-identification or clinical NER model against the leakage-first release gates G1a through G8, which gate releases on residual PHI leakage rather than on F1. Use when the user wants to run the OpenMed eval harness on a synthetic golden set, decide whether a de-id model is RELEASABLE or QUARANTINED, enforce direct-identifier recall floors, require zero critical leakage, fit calibration thresholds, or produce a signed gate report. Trigger on \"release gate\", \"leakage\", \...
Scanned 9/12/2026
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---
name: evaluating-with-leakage-gates
description: "Evaluate an OpenMed de-identification or clinical NER model against the leakage-first release gates G1a through G8, which gate releases on residual PHI leakage rather than on F1. Use when the user wants to run the OpenMed eval harness on a synthetic golden set, decide whether a de-id model is RELEASABLE or QUARANTINED, enforce direct-identifier recall floors, require zero critical leakage, fit calibration thresholds, or produce a signed gate report. Trigger on \"release gate\", \"leakage\", \"is this model safe to ship\", \"G1a\", \"G3\", \"quarantine\", \"recall floor\", or \"calibration thresholds\" in an OpenMed de-id context."
license: Apache-2.0
metadata:
project: OpenMed
category: evaluation-quality
pairs: adjacent
version: "1.0"
---
# Evaluating with Leakage Gates
OpenMed's release gates answer one question: **did any PHI leak?** A de-id model
with a beautiful F1 can still leak a single SSN — and that one leak is a HIPAA
breach. So `openmed.eval` gates on *residual leakage* and *per-label recall
floors*, not on aggregate F1. The candidate is either `RELEASABLE` or
`QUARANTINED`; there is no partial credit.
## When to use this skill
- You have a candidate de-id or PII model and need a ship / no-ship decision.
- You want to run the benchmark harness over a **synthetic** golden suite.
- You need to enforce direct-identifier recall floors and `critical_leakage == 0`.
- You need calibration thresholds (`thresholds.json`) before the gate will pass.
- You want a signed, reproducible gate report for governance.
This is the flagship eval skill. For a pure NER scorecard see
`benchmarking-clinical-ner`; for CI wiring see `gating-deid-leakage`.
## The gates (G1a–G8)
| Gate | Checks | Floor / rule |
| --- | --- | --- |
| **G1a** | Direct & quasi identifiers (PERSON, EMAIL, PHONE, SSN, ID_NUM, DATE_OF_BIRTH, ...) | recall ≥ 0.990 (v1.6) / 0.995 (v2.0); strict-no-leak policies raise the floor |
| **G1b** | Structured secrets (API_KEY, ACCOUNT_NUMBER, CREDIT_CARD, IBAN) | recall ≥ 0.995 |
| **G2** | Free-text names/locations/dates | recall ≥ 0.980 (v1.6) / 0.990 (v2.0) |
| **G3** | Critical leakage (SSN, CREDIT_CARD, CVV, API_KEY, PIN, IBAN, ...) | count **must be exactly 0** |
| **G4** | Quantized recall delta vs fp parent | within INT8 / INT4 limits |
| **G5** | Latency & RAM vs device tier budget | p50/p95/RAM under tier budget |
| **G6** | p50/p95 latency documented | must be present and finite |
| **G7** | Baseline regression | recall drop ≤ 0.002/label; leakage ≤ soft ceiling 0.005 and ≤ steward target; no leakage regression vs last-green |
| **G8** | Span integrity | predicted spans validate (no overlaps/out-of-range) |
Constants live in `openmed.eval.release_gates` (`G1A_V16_RECALL_FLOOR`,
`G1B_RECALL_FLOOR`, `G7_RECALL_DROP_LIMIT`, `RESIDUAL_LEAKAGE_SOFT_CEILING`, ...).
Confirm them there rather than hardcoding — they move per milestone.
## Quick start
Run a candidate benchmark over a synthetic golden suite, then gate it:
```python
from openmed.eval import run_suite, ReleaseGate, RELEASABLE
# 1) Produce a candidate BenchmarkReport from a SYNTHETIC fixtures file.
# Each fixture carries gold PHI spans; no real patient text is committed.
report = run_suite(
"eval/golden/phi_synthetic.json", # user-supplied synthetic fixtures
suite="golden",
model_name="OpenMed/Privacy-PII-Detection",
device="cpu",
metadata={
"family": "PII",
"tier": "base",
"policy": "hipaa_safe_harbor",
# calibration artifacts are required for mask/replace policies (see below)
"thresholds_path": "eval/artifacts/thresholds.json",
"calibration_report_path": "eval/artifacts/calibration_report.json",
},
)
# 2) Gate it. The gate reads the last-green baseline store read-only and
# returns a signed GateReport.
gate = ReleaseGate(milestone="v1.6", policy="hipaa_safe_harbor")
decision = gate.evaluate(report)
print(decision.decision) # "RELEASABLE" or "QUARANTINED"
for check in decision.gate_results:
if not check.passed:
print(check.gate, "->", check.reason, check.details)
assert decision.decision == RELEASABLE, "do not ship a quarantined model"
```
CLI equivalent (fails closed, exit code 1 on quarantine):
```bash
python -m openmed.eval.release_gates \
--candidate eval/out/candidate_report.json \
--milestone v1.6 --policy hipaa_safe_harbor \
--output release-gate-report.json
```
## Workflow
1. **Build a synthetic golden suite.** Fixtures are JSON with `text` and
`gold_spans` (offsets + labels). Use `building-gold-corpus` to scaffold one.
Committed gold must be synthetic; DUA corpora (i2b2/n2c2) are eval-only and
never committed.
2. **Fit calibration thresholds** for any policy that masks or replaces:
```python
from openmed.eval import write_calibration_artifacts
paths = write_calibration_artifacts(
calibration_samples, # held-out score/target samples
artifact_dir="eval/artifacts",
model_id="OpenMed/Privacy-PII-Detection",
suite="golden",
target_leakage=0.0, # leakage-first: drive leakage to 0
)
# writes thresholds.json + calibration_report.json the gate looks for
```
The gate's `calibration_present` check fails the build if these are missing
for a mask/replace policy.
3. **Run the suite** (`run_suite` / `run_benchmark`) to get a `BenchmarkReport`.
4. **Evaluate** with `ReleaseGate(...).evaluate(report)`.
5. **Read the per-gate results.** Each `GateCheck` carries `gate`, `passed`,
`reason`, and `details` (e.g. which labels fell below the recall floor).
6. **Fail closed.** Treat anything other than `RELEASABLE` as a hard stop.
7. **Audit subgroups** with `fairness_report` (see `auditing-subgroup-fairness`)
so an aggregate pass doesn't hide an under-protected group.
## Hand-off to / from OpenMed
- **From** `building-with-openmed` and the de-id pipeline: you evaluate the model
produced by `openmed.deidentify` / `openmed.extract_pii`.
- **To** `gating-deid-leakage`: wrap `ReleaseGate.evaluate(...)` in a pytest/CLI
gate so CI fails closed on regression.
- **To** `authoring-model-cards`: feed `GateReport`, `fairness_report`, and
`error_report` outputs into the model card's metrics and limitations sections.
- **Pairs with** `auditing-subgroup-fairness` (`fairness_report`) and
`benchmarking-clinical-ner` (`error_report`).
## Edge cases & gotchas
- **F1 is not a gate.** A model can have higher F1 and still be quarantined if it
leaks one critical identifier (G3) or drops a label below its floor (G1a/G1b).
- **Calibration is mandatory for mask/replace policies.** No `thresholds.json` →
`calibration_present` fails → `QUARANTINED`.
- **Baselines are read, never written, by the gate.** The gate compares against
the last-green baseline store without mutating it (G7). Promote baselines in a
separate, deliberate step.
- **Strict-no-leak policies raise the G1a floor** and force the leakage target to
0. Don't assume the default floor.
- **Reports must carry identity metadata** (`family`, `tier`, `format`,
`eval_set_hash`, `leakage_fixture_hash`); `manifest_coherence` fails without it.
- **Reports are signed** (HMAC-SHA256). Set `OPENMED_RELEASE_GATE_KEY` for a real
signing key; `GateReport.verify(key)` checks the repro hash and signature.
- **No raw PHI in the report.** Gate evidence is offsets, hashes, and labels —
never plaintext identifiers. Keep it that way in any wrapper you write.
## Standards & references
- HIPAA Safe Harbor / Expert Determination (45 CFR 164.514):
https://www.hhs.gov/hipaa/for-professionals/privacy/special-topics/de-identification/
- NIST SP 800-188, *De-Identification of Personal Information*:
https://csrc.nist.gov/pubs/sp/800/188/final
- i2b2 2014 de-identification shared task (recall-first evaluation tradition):
https://doi.org/10.1016/j.jbi.2015.06.007
- OpenMed eval source of truth: `openmed/eval/release_gates.py`,
`openmed/eval/harness.py`, `openmed/eval/calibrate.py`.
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