Use this skill to query the official GBIF API for a canonical species match and a small live occurrence sample.
Scanned 9/8/2026
Install to Claude Code
npx -y skills add ma-compbio-lab/SkillFoundry --skill gbif-species-occurrence-search-starter --agent claude-codeInstalls into .claude/skills of the current project.
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# GBIF Species Occurrence Search Starter
Use this skill to query the official GBIF API for a canonical species match and a small live occurrence sample.
## What it does
- Resolves a scientific name against the GBIF species matcher.
- Fetches a compact occurrence sample with optional country filtering.
- Returns a normalized JSON summary suitable for biodiversity data discovery and early species-distribution workflows.
## When to use it
- You need a verified starter for `Species distribution modeling`.
- You want a lightweight live biodiversity occurrence query without adding a heavyweight geospatial stack first.
## Example
```bash
python3 skills/ecology-evolution-and-biodiversity/gbif-species-occurrence-search-starter/scripts/run_gbif_species_occurrence_search.py \
--scientific-name "Puma concolor" \
--country US \
--out scratch/gbif/puma_concolor_us.json
```
## Verification
- Skill-local tests: `python3 -m unittest discover -s skills/ecology-evolution-and-biodiversity/gbif-species-occurrence-search-starter/tests -p 'test_*.py'`
- Repository smoke: `python3 -m unittest tests.smoke.test_phase30_empty_domain_seed_skills -v`
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