1. Read the summary statistics file. 2. Identify genome-wide significant lead variants. 3. Compute the genomic inflation factor lambda. 4. Produce a QQ plot under `output/`. 5. Write a final summary JSON to `output/summary.json` with fields for lead count, lambda, and plot path.
Scanned 9/4/2026
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# GWAS sumstats analysis — seed
## Workflow
1. Read the summary statistics file.
2. Identify genome-wide significant lead variants.
3. Compute the genomic inflation factor lambda.
4. Produce a QQ plot under `output/`.
5. Write a final summary JSON to `output/summary.json` with fields for
lead count, lambda, and plot path.
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