Deploys and configures osquery for real-time endpoint monitoring using SQL-based queries to inspect running processes, open ports, installed software, and system configuration. Use when building visibility into endpoint state, threat hunting across fleet, or implementing compliance monitoring.
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Added November 7, 2026
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---
name: webapp-deploying-osquery-for-endpoint-monitoring
description: Deploys and configures osquery for real-time endpoint monitoring using SQL-based queries to inspect running processes, open ports, installed software, and system configuration. Use when building visibility into endpoint state, threat hunting across fleet, or implementing compliance monitoring.
domain: webapp
category: endpoint-security
hide: true
license: Apache-2.0
metadata:
manifest_entry: src/corpus/webapp-deploying-osquery-for-endpoint-monitoring/SKILL.md
---
# Deploying Osquery for Endpoint Monitoring
## When to Use
Use this skill when:
- Deploying osquery across Windows, macOS, and Linux endpoints for fleet-wide visibility
- Building threat hunting queries using osquery's SQL interface
- Monitoring endpoint compliance (installed software, open ports, running services)
- Integrating osquery data with SIEM or Kolide/Fleet for centralized management
**Do not use** for real-time alerting (osquery is periodic/on-demand; use EDR for real-time).
## Common Misconfigurations & Verification
- **Packs declared but never scheduled:** a `"packs"` entry pointing to a missing/unreadable path is silently skipped — check `SELECT name, interval FROM osquery_schedule;` and `SELECT * FROM osquery_packs;` on the endpoint to confirm queries are actually loaded and running.
- **Event tables empty because events are off:** `process_events`, `socket_events`, and `file_events` return nothing unless `--disable_events=false` AND the audit publisher is on (`--disable_audit=false`, `--audit_allow_config=true`). On Linux confirm osquery owns auditd (it conflicts with a running `auditd`/`auditbeat`).
- **Scope too narrow / WHERE filters out hits:** the fileless query `WHERE on_disk = 0` and the `uid >= 1000` user query miss kernel-spawned or service-account activity. Validate WHERE clauses against a known-positive before trusting a clean result.
- **Fleet enrollment or result logging broken:** confirm hosts appear in FleetDM and that `/var/log/osquery/osqueryd.results.log` is filling; an enrolled host with no results log forwards nothing. Differential mode logs only a baseline on first run.
- **Verify end-to-end:** trigger a watched condition (open a listening port, add a crontab/Run-key per Atomic Red Team T1547/T1053) and confirm the scheduled query emits a row to the results log and into the SIEM at the next interval.
## Prerequisites
- Osquery package for target OS (https://osquery.io/downloads)
- Fleet management server (Kolide Fleet or FleetDM) for enterprise deployment
- TLS certificates for secure agent-to-server communication
- Log aggregation pipeline (Filebeat, Fluentd) for osquery result logs
## Workflow
### Step 1: Install Osquery
```bash
# Ubuntu/Debian
export OSQUERY_KEY=[REDACTED]
apt-key adv --keyserver hkp://keyserver.ubuntu.com:80 --recv-keys $OSQUERY_KEY
add-apt-repository 'deb [arch=amd64] https://pkg.osquery.io/deb deb main'
apt-get update && apt-get install osquery -y
# Windows (MSI)
# Download from https://osquery.io/downloads/official
msiexec /i osquery-5.12.1.msi /quiet
# macOS
brew install osquery
```
### Step 2: Configure Osquery
```jsonc
// /etc/osquery/osquery.conf (Linux/macOS) or C:\ProgramData\osquery\osquery.conf
{
"options": {
"config_plugin": "filesystem",
"logger_plugin": "filesystem",
"logger_path": "/var/log/osquery",
"disable_logging": "false",
"schedule_splay_percent": "10",
"events_expiry": "3600",
"verbose": "false",
"worker_threads": "2",
"enable_monitor": "true",
"disable_events": "false",
"disable_audit": "false",
"audit_allow_config": "true",
"host_identifier": "hostname",
"enable_syslog": "true"
},
"schedule": {
"process_monitor": {
"query": "SELECT pid, name, path, cmdline, uid, parent FROM processes WHERE on_disk = 0;",
"interval": 300,
"description": "Detect processes running without on-disk binary (fileless)"
},
"listening_ports": {
"query": "SELECT DISTINCT p.name, p.path, lp.port, lp.protocol, lp.address FROM listening_ports lp JOIN processes p ON lp.pid = p.pid WHERE lp.port != 0;",
"interval": 600,
"description": "Monitor listening network ports"
},
"persistence_check": {
"query": "SELECT name, path, source FROM startup_items;",
"interval": 3600,
"description": "Monitor persistence mechanisms"
},
"installed_packages": {
"query": "SELECT name, version, source FROM deb_packages;",
"interval": 86400,
"description": "Daily software inventory"
},
"users_and_groups": {
"query": "SELECT u.username, u.uid, u.gid, u.shell, u.directory FROM users u WHERE u.uid >= 1000;",
"interval": 3600
},
"crontab_monitor": {
"query": "SELECT * FROM crontab;",
"interval": 3600,
"description": "Monitor scheduled tasks"
},
"suid_binaries": {
"query": "SELECT path, username, permissions FROM suid_bin;",
"interval": 86400,
"description": "Detect SUID binaries"
}
},
"packs": {
"incident-response": "/usr/share/osquery/packs/incident-response.conf",
"ossec-rootkit": "/usr/share/osquery/packs/ossec-rootkit.conf",
"vuln-management": "/usr/share/osquery/packs/vuln-management.conf"
}
}
```
### Step 3: Threat Hunting Queries
```sql
-- Detect processes with no on-disk binary (potential fileless malware)
SELECT pid, name, path, cmdline FROM processes WHERE on_disk = 0;
-- Find listening ports not associated with known services
SELECT lp.port, lp.protocol, p.name, p.path
FROM listening_ports lp JOIN processes p ON lp.pid = p.pid
WHERE lp.port NOT IN (22, 80, 443, 3306, 5432);
-- Detect unauthorized SSH keys
SELECT * FROM authorized_keys WHERE NOT key LIKE '%admin-team%';
-- Find recently modified system binaries
SELECT path, mtime, size FROM file
WHERE path LIKE '/usr/bin/%' AND mtime > (strftime('%s', 'now') - 86400);
-- Detect processes connecting to external IPs
SELECT DISTINCT p.name, p.path, pn.remote_address, pn.remote_port
FROM process_open_sockets pn JOIN processes p ON pn.pid = p.pid
WHERE pn.remote_address NOT LIKE '10.%'
AND pn.remote_address NOT LIKE '172.16.%'
AND pn.remote_address NOT LIKE '192.168.%'
AND pn.remote_address != '127.0.0.1'
AND pn.remote_address != '0.0.0.0';
-- Windows: Detect unsigned running executables
SELECT p.name, p.path, a.result AS signature_status
FROM processes p JOIN authenticode a ON p.path = a.path
WHERE a.result != 'trusted';
```
### Step 4: Deploy FleetDM for Centralized Management
```bash
# FleetDM provides centralized osquery management
# Deploy FleetDM server, configure agents to report to it
# Agents use TLS enrollment and config from Fleet
# Agent configuration for Fleet:
# --tls_hostname=fleet.corp.com
# --tls_server_certs=/etc/osquery/fleet.pem
# --enroll_secret_path=/etc/osquery/enroll_secret
```
## Key Concepts
| Term | Definition |
|------|-----------|
| **Osquery** | Open-source endpoint agent that exposes OS state as SQL tables for querying |
| **Schedule** | Periodic queries that run at defined intervals and log results |
| **Pack** | Collection of related queries grouped for specific use cases (IR, compliance) |
| **FleetDM** | Open-source osquery fleet management platform |
| **Differential Results** | Osquery logs only changes between query executions, reducing data volume |
## Tools & Systems
- **Osquery**: https://osquery.io/ - endpoint visibility agent
- **FleetDM**: https://fleetdm.com/ - centralized fleet management
- **Kolide**: Cloud-based osquery management with Slack integration
- **osquery-go**: Go client library for osquery extensions
## Common Pitfalls
- **Query performance**: Complex queries with large table scans impact endpoint performance. Use WHERE clauses and test query cost with `EXPLAIN`.
- **Schedule intervals too aggressive**: Running heavy queries every 60 seconds causes CPU spikes. Use 300-3600 second intervals for most queries.
- **Not using differential mode**: Without differential logging, osquery logs all results every interval. Differential mode logs only changes.
- **Missing event tables**: Some osquery tables require events framework enabled (process_events, socket_events). Enable with `--disable_events=false`.