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Tools & Automation
CLI tools, utilities, converters, workflow automation, and productivity helpers
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Showing 2,665–2,688 of 46,849 skills
- Bio Alignment IndexingCreate and use BAI/CSI indices for BAM/CRAM files using samtools and pysam. Use when enabling random access to alignment files or fetching specific genomic regions.Votes: 0GitHub stars: 2
- Bio Alignment FilteringFilter alignments by flags, mapping quality, and regions using samtools view and pysam. Use when extracting specific reads, removing low-quality alignments, or subsetting to target regions.Votes: 0GitHub stars: 2
- Big ReviewRun the local `review.sh` script to get multi-model review findings, then triage and address valid issues before final validation and PR creation.Votes: 0GitHub stars: 2
- Better ContextClone and explore external codebases using the better-context CLI. Use this skill when: - User wants to explore a GitHub repository (e.g., "explore anthropics/claude-code") - User asks how a library/framework works and you need to read its source - User wants to understand implementation details of an external project - User provides a repo URL or owner/repo and wants you to examine itVotes: 0GitHub stars: 2
- BenchmarkRun benchmarks for the crypto-rs-backtester project (Python and Rust).Votes: 0GitHub stars: 2
- Bear Notes 1Create, search, and manage Bear notes via grizzly CLI.Votes: 0GitHub stars: 2
- Beans Issue TrackingTracks work with beans CLI for audit trails and agent memory. Use when starting tasks, finding next work, or recording discovered issues during implementation.Votes: 0GitHub stars: 2
- Beads WorkflowBeads issue tracking and workflow management with automatic git branch creation. MUST BE USED for Beads operations. Handles full epic→branch→work lifecycle, dependencies, and ready task queries. Use when creating epics/features (auto-creates branch), tracking work, finding ready issues, or managing dependencies, or when user mentions "create issue", "track work", "bd create", "find ready tasks", issue management, dependencies, work tracking, or Beads workflow operations.Votes: 0GitHub stars: 2
- Beads ReviewReview, proofread, refine, and polish existing Beads epics and issues for clarity, completeness, and smooth implementation. Use after Beads have been filed, or when asked to audit/improve a Beads tracker.Votes: 0GitHub stars: 2
- Beads Issue TrackingUse this when working on tasks in this repo that require bd (beads) issue tracking, status updates, and the mandatory end-of-session push workflow.Votes: 0GitHub stars: 2
- Beads ImplementImplement Beads work items from a bead id. Use when the user runs $beads-implement <bead-id> or asks to implement a bead/epic; if it is an epic, implement all sub-tasks, committing after each one and only interrupting when blocked or a decision is needed.Votes: 0GitHub stars: 2
- Beads CreateTranslate a finalized plan into Beads epics and issues with clear dependencies, design notes, and parallelization. Use when asked to file Beads from a plan/spec (OpenSpec, PRD, design doc), or when converting an external plan into a detailed Beads tracking structure.Votes: 0GitHub stars: 2
- Beads 6Persistent task memory using dependency graphs. For multi-session work that must survive compaction.Votes: 0GitHub stars: 2
- Beads 4Git-backed issue tracker for multi-session work with dependencies and persistent memory across conversation compaction. Use when work spans sessions, has blockers, or needs context recovery after compaction. Triggers: "tasks", "beads", "task tracker", "issue tracker", "task memory", "bd", "issues".Votes: 0GitHub stars: 2
- BdBacklog management with the bd (beads) utility for issue tracking. Use when creating issues, claiming work, updating task status, closing completed work, or syncing the backlog with git.Votes: 0GitHub stars: 2
- Bazinga Db CoreSession lifecycle and system operations. Use when creating sessions, saving state, getting dashboard data, or running system queries.Votes: 0GitHub stars: 2
- BatsBash Automated Testing System (BATS) for TDD-style testing of shell scripts. Use when: (1) Writing unit or integration tests for Bash scripts, (2) Testing CLI tools or shell functions, (3) Setting up test infrastructure with setup/teardown hooks, (4) Mocking external commands (curl, git, docker), (5) Generating JUnit reports for CI/CD, (6) Debugging test failures or flaky tests, (7) Implementing test-driven development for shell scripts.Votes: 0GitHub stars: 2
- Batch ReportGenerate post-run analysis reports for batch processing jobs. Analyzes manifests, timings, and failures to produce comprehensive markdown reports. Optionally sends to agent-inbox for cross-project communication.Votes: 0GitHub stars: 2
- Batch Report GeneratorGenerate GenuVerity fact-check reports from structured input (Gemini research output). Use /batch-report to process research into HTML reports. Optimized for token efficiency - expects pre-researched sources.Votes: 0GitHub stars: 2
- Bash Scripting 1Instructions in case if any bash (or any shell in general) script is needed.Votes: 0GitHub stars: 2
- Bash HistorySearch and retrieve bash command history using Atuin. Use when users ask about commands they've run before, want to find a specific command, recall how they did something previously, or ask "how did I..." or "what command did I use to..."Votes: 0GitHub stars: 2
- Bash ExpertExpert Bash help for writing, debugging, and optimizing safe, portable shell one-liners and scripts on macOS/Linux. Use when users ask for Bash or POSIX sh commands, script reviews, ShellCheck fixes, quoting/pipeline issues, process/file automation, or converting requirements into shell scripts.Votes: 0GitHub stars: 2
- Bash CompletionsInstructions for adding to bash auto completions in the AutomateLinux project.Votes: 0GitHub stars: 2
- Bash AutomationBash scripting for security automation. One-liners, enumeration, post-exploitation. Use for quick scripts and automation tasks.Votes: 0GitHub stars: 2