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Claude Skills by stanfish06
github.com/stanfish061,773 skills143 installs3,463 views
- Scientific Critical ThinkingEvaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE, Cochrane ROB), for critical analysis of scientific claims.Votes: 0GitHub stars: 8
- Scientific SlidesBuild slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design templates, timing guidance, and visual validation. Works with PowerPoint and LaTeX Beamer.Votes: 0GitHub stars: 8
- Scientific WritingCore skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.Votes: 0GitHub stars: 8
- Scikit ImageA collection of algorithms for image processing in Python. Built on NumPy, SciPy, and Cython. It focuses on scientific image analysis including segmentation, geometric transformations, color space manipulation, analysis, and filtering.Votes: 0GitHub stars: 8
- Scikit LearnMachine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model evaluation, hyperparameter tuning, preprocessing, or building ML pipelines. Provides comprehensive reference documentation for algorithms, preprocessing techniques, pipelines, and best practices.Votes: 0GitHub stars: 8
- Scikit SurvivalComprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill when working with censored survival data, performing time-to-event analysis, fitting Cox models, Random Survival Forests, Gradient Boosting models, or Survival SVMs, evaluating survival predictions with concordance index or Brier score, handling competing risks, or implementing any survival analysis workflow with the scikit-survival library.Votes: 0GitHub stars: 8
- Scirpy Immune RepertoireSingle-cell immune receptor analysis with Scirpy for scanpy, anndata, and scvi-tools projects. Use for TCR/BCR V(D)J import, clonotype definition, clonal expansion, repertoire overlap, immune receptor QC, MuData/AnnData integration, and Scanpy-linked immune repertoire visualization.Votes: 0GitHub stars: 8
- Screenshot CliUse when the user's host screen must be captured — the full desktop, one monitor, or a pixel region — or when a screen capture needs cropping, resizing, rotation, flipping, format conversion (png/jpeg/webp), quality control, or filters/enhancement; also when you need to enumerate connected monitors and their geometry. Not for browser-page screenshots (use claude-in-chrome).Votes: 0GitHub stars: 8
- Scrna OrchestratorLocal Scanpy pipeline for single-cell RNA-seq QC, optional doublet detection, clustering, marker discovery, optionalVotes: 0GitHub stars: 8
- Scrna Preprocessing ClusteringStandard scRNA-seq preprocessing and clustering with Scanpy. Use for QC, normalization, HVG selection, PCA, neighbor graph construction, UMAP, Leiden clustering, and export of an analysis-ready AnnData object.Votes: 0GitHub stars: 8
- Scrna Seq QcProcess, quality-control, annotate, and visualize single-cell or single-nucleus RNA-seq datasets across tissues and species. Use when Codex needs to build, adapt, or review a general scRNA-seq QC pipeline; choose dataset-appropriate cell-level filters from QC distributions; run required scDblFinder-based doublet and ambient-RNA filtering; annotate cells with matched references or marker-based fallbacks; or generate global and per-group UMAP visualizations for large scRNA-seq datasets.Votes: 0GitHub stars: 8
- Scrollytelling And Parallax Data VisualizationDesign and implement parallax scrolling and scrollytelling data visualizations. Use when the user asks for parallax scrolling, scrollytelling, scroll-driven timelines, sticky graphics, Scrollama, ScrollTrigger, ScrollTimeline, view timelines, rich-media timelines, moviescrollers, scroll-scrubbed charts, staged narrative reveals, or interactive visual stories where scrolling changes a data visualization or media scene.Votes: 0GitHub stars: 8
- ScveloRNA velocity analysis with scVelo. Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajectory directions, compute latent time, and identify driver genes in single-cell RNA-seq data. Complements Scanpy/scVI-tools for trajectory inference.Votes: 0GitHub stars: 8
- Scvi ToolsDeep generative models for single-cell omics. Use when you need probabilistic batch correction (scVI), transfer learning, differential expression with uncertainty, or multi-modal integration (TOTALVI, MultiVI). Best for advanced modeling, batch effects, multimodal data. For standard analysis pipelines use scanpy.Votes: 0GitHub stars: 8
- Sec ReportSEC (size-exclusion chromatography) analysis with peak detection, oligomer classification, and publication-quality PDF report generation via Typst templates. Triggers on "SEC", "size exclusion", "chromatography", "oligomer analysis", "protein assembly", "SEC report".Votes: 0GitHub stars: 8
- Security Diff ScanUse when the user asks for a security review of a pull request, commit, branch diff, working-tree patch, or other Git-backed change set.Votes: 0GitHub stars: 8
- Security ScanUse for a standard, single-pass security audit of an entire repository or a scoped path, package folder, or submodule with no diff to review. This is the default repository scan. Do not use for PR/commit/branch/working-tree diffs, or for deep, multi-pass, or variance-reducing scans.Votes: 0GitHub stars: 8
- SedimentologistExpert-thinking profile for Sedimentologist (field logging / facies analysis / granulometry & petrography / core-log-seismic integration / reservoir quality): Reasons from grain-scale hydraulics, facies associations, and base-level accommodation through measured sections, Folk & Ward granulometry, Bouma divisions, ichnofacies, and core-log-seismic ties while treating diagenetic overprint, bioturbation-destroyed laminae, fining-upward and shale-equals-deep-water defaults...Votes: 0GitHub stars: 8
- SeismologistExpert-thinking profile for Seismologist (observational / computational / operational seismology): Reasons from elastic wave theory and Earth models through detection, HypoDD/iLoc location, moment tensors, ambient-noise and receiver-function imaging, PSHA/OpenQuake hazard, and NEIC-style operational products (ShakeMap, PAGER, EEW) with explicit artifact and magnitude-type discipline.Votes: 0GitHub stars: 8
- Semiconductor Device EngineerExpert-thinking profile for Semiconductor Device Engineer (device characterization / TCAD-to-silicon calibration / compact modeling (BSIM-CMG) / wafer-level reliability (NBTI/HCI/TDDB) / FinFET-GAA): Reasons from electrostatics, capacitance-current MOSFET physics, interface-trap behavior, and self-heating through I-V/C-V extraction ladders, Sentaurus TCAD calibrated to silicon splits, BSIM-CMG compact modeling, and JEDEC reliability stress while treating uncalibrated TCAD, unstated constant-c...Votes: 0GitHub stars: 8
- Semiconductor Materials ScientistExpert-thinking profile for Semiconductor Materials Scientist (bulk & epitaxial growth / defect & transport characterization): Reasons from band structure, defect energetics, and process–structure–property links; grows and characterizes bulk and epitaxial semiconductors (Si, III–V, SiC, GaN, 2D) via MOCVD/MBE/HVPE, Hall/DLTS/XRD/RSM/ECCI/TEM/SIMS, and DFT defect levels while treating compensation, Fermi-level pinning, threading dislocations...Votes: 0GitHub stars: 8
- Semiconductor PhysicistExpert-thinking profile for Semiconductor Physicist (theory / transport & defect spectroscopy / heterostructures): Reasons from ε_n(k), effective-mass tensor, and 2D subband DOS through Hall/multiband fits, mobility scattering analysis, Lang DLTS (E_T, σ, N_T), and quantum-well intersubband spectroscopy while treating compensation, rate- window artifacts, and DFT gap error as first-class failure modes.Votes: 0GitHub stars: 8
- Sensor EngineerExpert-thinking profile for Sensor Engineer (MEMS / optical / instrumentation design and characterization): Reasons from transduction physics and error budgets through MEMS IMU Allan variance (ARW, bias instability, rate random walk), six-position and temperature calibration, piezoresistive/capacitive pressure validation, and photodiode–TIA NEP/SNR while treating vibration rectification, mag distortion, and aliased...Votes: 0GitHub stars: 8
- Separation Processes EngineerExpert-thinking profile for Separation Processes Engineer (process simulation / pilot plant / plant troubleshooting): Reasons from VLE/LLE thermodynamics, FUG shortcuts, and NRTL/PR property packages through Aspen RadFrac, CGCC/pinch integration, membrane Robeson bounds, chromatography van Deemter scale-up, and MSZW crystallization while treating wrong BIPs, jet flood/entrainment, concentration polarization, and lab-to- plant MSZW as...Votes: 0GitHub stars: 8
- Sequence AnalysisAnalyze DNA/RNA/protein sequences. Use when the user provides a sequence and asks for analysis, translation, GC content, ORFs, motifs, restriction sites, or primer design. Triggers on "sequence", "translate", "GC content", "ORF", "primer", "restriction", "complement", "reverse complement".Votes: 0GitHub stars: 8
- Setup Local SdkInstall a .NET SDK locally for safe preview testing, specific-version pinning, or reproducible team setups — without modifying the system-wide installation. USE FOR: trying .NET previews safely, testing specific SDK versions, installing MAUI or other workloads on a preview, updating or replacing an existing local SDK, creating reproducible team/CI install scripts, configuring global.json paths. DO NOT USE FOR: system-wide SDK installs, .NET hosts older than 10, runtime-only installs, or proje...Votes: 0GitHub stars: 8
- Setup Ts Deep ModulesWire dependency-cruiser into a TypeScript repo so each package is a deep module, with implementation hidden in subfolders and reachable only through its entry-point files. User-invoked.Votes: 0GitHub stars: 8
- Setup Zoom OauthUse when setting up OAuth.Votes: 0GitHub stars: 8
- SetupVerify Daloopa MCP connection and show available skillsVotes: 0GitHub stars: 8
- SeuratSingle-cell RNA-seq analysis in R with Seurat v5 — QC, normalization (LogNormalize or SCTransform), dimensionality reduction, clustering, marker detection, integration of multiple samples, and interconversion with AnnData/scanpy. Use when single-cell work must stay in R/Bioconductor, when collaborators expect a Seurat object, or when following an R-based tutorial. For Python single-cell workflows use scanpy/anndata instead.Votes: 0GitHub stars: 8
- Sglang Prod Incident TriageReplay-first debug flow for SGLang serving problems. Use when a live or recent server shows health-check failures, latency or throughput regressions, queue growth, timeouts, distributed stalls, crash dumps, wrong outputs after deploys, or PD/EP/HiCache issues, and the job is to turn the problem into a replay plus the right next debug tool.Votes: 0GitHub stars: 8
- ShapModel interpretability and explainability using SHAP (SHapley Additive exPlanations). Use this skill when explaining machine learning model predictions, computing feature importance, generating SHAP plots (waterfall, beeswarm, bar, scatter, force, heatmap), debugging models, analyzing model bias or fairness, comparing models, or implementing explainable AI. Works with tree-based models (XGBoost, LightGBM, Random Forest), deep learning (TensorFlow, PyTorch), linear models, and any black-box mo...Votes: 0GitHub stars: 8
- Shipping And LaunchPrepares production launches. Use when preparing to deploy to production. Use when you need a pre-launch checklist, when setting up monitoring, when planning a staged rollout, or when you need a rollback strategy.Votes: 0GitHub stars: 8
- Shopify AdminWrite or explain **Admin GraphQL** queries and mutations for apps and integrations that extend the Shopify admin. Use when the user wants to **understand, design, or generate** the operation itself—even before deciding how to run it. Do **not** choose `admin` first for **app or extension config validation** —use **`use-shopify-cli`**. Do **not** choose `admin` first to **execute** Admin GraphQL **now via Shopify CLI** or for CLI setup/troubleshooting on store workflows—use **`use-shopify-cli`...Votes: 0GitHub stars: 8
- Shopify App Store ReviewRun a pre-submission compliance check against your Shopify app's codebase. Reviews App Store requirements and surfaces likely issues before you submit for official review.Votes: 0GitHub stars: 8
- Shopify Custom DataUse first when prompts mention Metafields or Metaobjects. Use Metafields and Metaobjects to model and store custom data for your app. Metafields extend built-in Shopify data types like products or customers, Metaobjects are custom data types that can be used to store bespoke data structures. Metafield and Metaobject definitions provide a schema and configuration for values to follow.Votes: 0GitHub stars: 8
- Shopify CustomerThe Customer Account API allows customers to access their own data including orders, payment methods, and addresses.Votes: 0GitHub stars: 8
- Shopify DevSearch Shopify developer documentation across all APIs. Use only when no API-specific skill applies.Votes: 0GitHub stars: 8
- Shopify FunctionsShopify Functions allow developers to customize the backend logic that powers parts of Shopify. Available APIs: Discount, Cart and Checkout Validation, Cart Transform, Pickup Point Delivery Option Generator, Delivery Customization, Fulfillment Constraints, Local Pickup Delivery Option Generator, Order Routing Location Rule, Payment CustomizationVotes: 0GitHub stars: 8
- Shopify HydrogenHydrogen storefront implementation cookbooks. Some of the available recipes are: B2B Commerce, Bundles, Combined Listings, Custom Cart Method, Dynamic Content with Metaobjects, Express Server, Google Tag Manager Integration, Infinite Scroll, Legacy Customer Account Flow, Markets, Partytown + Google Tag Manager, Subscriptions, Third-party API Queries and Caching. MANDATORY: Use this API for ANY Hydrogen storefront question - do NOT use Storefront GraphQL when 'Hydrogen' is mentioned.Votes: 0GitHub stars: 8
- Shopify LiquidLiquid is an open-source templating language created by Shopify. It is the backbone of Shopify themes and is used to load dynamic content on storefronts. Keywords: liquid, theme, shopify-theme, liquid-component, liquid-block, liquid-section, liquid-snippet, liquid-schemas, shopify-theme-schemasVotes: 0GitHub stars: 8
- Shopify Onboarding DevGet started building on Shopify. Use when a developer asks to build an app, build a theme, create a dev store, set up a partner account, scaffold a project, or get started developing for Shopify. NOT for merchants managing stores.Votes: 0GitHub stars: 8
- Shopify Onboarding MerchantSet up and connect a Shopify store from your AI assistant. Use when the user wants to: set up my Shopify store, connect my store, install Shopify plugin, get started with Shopify, manage my store, add products to my store, merchant onboarding, start selling online, Shopify setup help, create my first store, how do I set up an online store, import products, migrate from Square, migrate from WooCommerce, migrate from Etsy, migrate from Amazon, migrate from eBay, migrate from Wix, import from Go...Votes: 0GitHub stars: 8
- Shopify PartnerThe Partner API lets you programmatically access data about your Partner Dashboard, including your apps, themes, and affiliate referrals.Votes: 0GitHub stars: 8
- Shopify Payments AppsThe Payments Apps API enables payment providers to integrate their payment solutions with Shopify's checkout.Votes: 0GitHub stars: 8
- Shopify Polaris Admin ExtensionsAdd custom actions and blocks from your app at contextually relevant spots throughout the Shopify Admin. Admin UI Extensions also supports scaffolding new adminextensions using Shopify CLI commands.Votes: 0GitHub stars: 8
- Shopify Polaris App HomeBuild your app's primary user interface embedded in the Shopify admin. If the prompt just mentions `Polaris` and you can't tell based off of the context what API they meant, assume they meant this API.Votes: 0GitHub stars: 8
- Shopify Polaris Checkout ExtensionsBuild custom functionality that merchants can install at defined points in the checkout flow, including product information, shipping, payment, order summary, and Shop Pay. Checkout UI Extensions also supports scaffolding new checkout extensions using Shopify CLI commands.Votes: 0GitHub stars: 8
- Shopify Polaris Customer Account ExtensionsBuild custom functionality that merchants can install at defined points on the Order index, Order status, and Profile pages in customer accounts. Customer Account UI Extensions also supports scaffolding new customer account extensions using Shopify CLI commands.Votes: 0GitHub stars: 8
- Shopify Pos UiBuild retail point-of-sale applications using Shopify's POS UI components. These components provide a consistent and familiar interface for POS applications. POS UI Extensions also supports scaffolding new POS extensions using Shopify CLI commands. Keywords: POS, Retail, smart gridVotes: 0GitHub stars: 8