Claude Skills by stanfish06

Expert-thinking profile for Plant Breeder (field breeding / quantitative & molecular genetics / genomic selection / METs / cultivar release (DUS, UPOV/OECD)): Reasons from genetic variance, selection response (R = h²S), and breeding values through BLUP/GBLUP mixed models, multi-environment alpha-lattice trials with check cultivars, genomic selection validated within relatedness, and DUS/seed-certification standards, while treating linkage drag, G×E and G×management rank...

Expert-thinking profile for Plant Pathologist (diagnostic clinic / field epidemiology / wet-lab & molecular phytopathology): Reasons from the disease triangle, sign vs. symptom, and trophic strategy (biotroph/necrotroph/hemibiotroph); runs clinic-to-Koch workflows (TWA isolation, Phytophthora pear baiting, Baermann nematodes, EPPO PM7/qPCR with matrix-specific Ct cutoffs) and epidemic analysis (AUDPC/AUDPS, Vanderplank parameters, GLMMs)...

Expert-thinking profile for Plant Physiologist (wet-lab / greenhouse / field plant physiology): Reasons from source–sink carbon–water balance, FvCB A–Ci and Ball–Berry gs models, LI-COR/PAM gas exchange, Scholander Ψ, drought–salt–heat signaling, and MIAPPE/Phytozome workflows while treating chamber leakage, pot-bound roots, and Fv/Fm–yield conflation as first-class failure modes.

Expert-thinking profile for Plasma Physicist (fusion + space plasma / MHD & gyrokinetic / PIC simulation / tokamak-stellarator diagnostics / reconnection): Reasons from collective scales (Debye length, plasma frequency), dimensionless regime parameters (beta, collisionality, Lundquist number), and instability drive-versus- dissipation through Grad-Shafranov equilibria (EFIT, VMEC), gyrokinetic and MHD codes (GENE, NIMROD, XGC), PIC simulation (VPIC, OSIRIS), and...

Use when creating interactive Python visualizations with Plotly, including pan, zoom, hover charts, dashboard figures, interactive HTML output, or 3D plots. Trigger terms include plotly, interactive chart, interactive plot, dashboard chart, hover, and plotly express. For static publication figures use matplotlib or seaborn; for visualization strategy use scientific-visualization.

Create and scaffold plugin directories for Codex with a required `.codex-plugin/plugin.json`, optional plugin folders/files, and baseline placeholders you can edit before publishing or testing. Use when Codex needs to create a new personal plugin, add optional plugin structure, or generate or update personal or repo-root `.agents/plugins/marketplace.json` entries for plugin ordering and availability metadata.

Help engineers evaluate a local skill or plugin, explain why it scored that way, show what to fix first, measure real token usage, benchmark starter scenarios, or decide what to run next. Use when the user says things like "evaluate this skill", "give me an analysis of the game dev skill", "why did this score that way", "what should I fix first", "measure the real token usage of this skill", or "what should I run next?".

High-performance genomic interval operations and bioinformatics file I/O on Polars DataFrames. Overlap, nearest, merge, coverage, complement, subtract for BED/VCF/BAM/GFF intervals. Streaming, cloud-native, faster bioframe alternative.

Expert-thinking profile for Pollution Control Engineer (design / engineering / regulatory compliance): Reasons from PTE, Title V Part 70, and NPDES limits through scrubber/baghouse/ESP/RTO selection, CEMS and stack-test demonstration, and parametric O&M (ΔP, pH, L/G) while treating synthetic-minor strategy, sulfite-blinded FGD, bag leaks, and WET/TIE toxicity as first-class failure modes.

Expert-thinking profile for Polymer Chemist (wet-lab / synthetic polymer chemistry): Designs and interprets polymer synthesis, characterization, and structure–property relationships from mechanism (chain-growth, step-growth, RDRP, ROMP) through absolute MW verification to application-relevant thermal and rheological data.

Expert-thinking profile for Polymer Scientist (synthesis / characterization / rheology-morphology / polymer processing / failure analysis): Reasons from molecular weight distribution, Tg/Tm and crystallinity, viscoelasticity, and phase behavior through GPC/SEC, DSC heat-cool-heat, capillary and oscillatory rheology, WAXD/SAXS, and DMA while treating thermal-history erasure, moisture hydrolysis, incomplete cure, and wrong-grade-lot artifacts as first-class...

Expert-thinking profile for Population Geneticist (dry-lab / computational population genomics): Reasons from Wright–Fisher/coalescent demography, Weir–Cockerham FST, EIGENSOFT PCA, ADMIXTURE ancestry, ADMIXTOOLS f-statistics, and selscan XP-EHH/iHS/PBS selection scans while treating batch confounding, LD pruning choices, cryptic relatedness, and admixture-LD artifacts as first-class failure modes.

Analyze product data and manage product tooling in PostHog. Use when the user wants product analytics or insights, HogQL/SQL queries, feature flags, experiments and A/B tests, error tracking, session replay, surveys, LLM analytics, dashboards, data warehouse, or PostHog documentation.

Expert-thinking profile for Poultry Scientist (pen/house trials / nutrition & feed formulation / gut health & coccidiosis / hatchery & incubation / processing yield / poultry welfare): Reasons from flock-level feed-to-gain conversion, digestible amino acid balance, and thermal/respiratory/pathogen load through FCR/EPEF and HDEP/HOF metrics, pen-or-house mixed models, coccidiosis lesion scoring, hatchery break-out, and strain management guides while treating subclinical coccidiosis and necroti...

Expert-thinking profile for Power Electronics Engineer (converter design / magnetics / WBG semiconductors / loop-gain control / EMI-EMC / regulatory (CISPR, IEC 61000-3-2, IEEE 1547.1)): Reasons from volt-second and charge balance, switched-mode energy transfer, and small-signal loop gain through PLECS/LTspice/SIMPLIS simulation, Steinmetz and Dowell magnetics loss accounting, Bode injection on hardware, and LISN- based EMI scans while treating shoot-through, RHP-zero subharmonic oscillation,...

Expert-thinking profile for Power Grid Engineer (transmission / protection / planning / NERC compliance): Reasons from AC power flow, N-1 contingency, and relay coordination through PSS/E studies, distance/differential protection, IBR/IEEE 2800 models, COMTRADE event analysis, and NERC TPL/PRC standards while treating EMS topology drift, voltage collapse, and ATC vs nameplate as first-class failure modes.

Expert-thinking profile for Power Systems Engineer (power flow / protection coordination / DER hosting / stability & EMT / standards (NERC TPL, IEEE 1547, IEC 60909)): Reasons from per-unit impedances, symmetrical components, swing equations, and relay reach through PSS/E, OpenDSS, Aspen OneLiner, PSCAD, and NERC TPL/IEEE 1547/IEC 60909 criteria while treating loss of protection selectivity, DER-driven reverse power flow and voltage rise, CT saturation, and voltage collapse as...

Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly requests PowerPoint/PPTX poster format. For standard research posters, use latex-posters instead. This skill provides modern web-based poster design with responsive layouts and easy visual integration.

Runs a pre-submission review of a technical paper across five dimensions: macro logic, writing details, English grammar, LaTeX formatting, and figure quality. Uses a reviewer-style severity taxonomy (CRITICAL / MAJOR / MINOR) and flags banned AI-tone vocabulary and em-dash misuse. Use when the user asks to 'review this paper', 'audit before submission', 'check the draft', 'find issues', 'proofread', or within one week of a submission deadline.

Precedent M&A transactions analysis with deal multiples and acquisition

Expert-thinking profile for Precision Agriculture Specialist (site-specific crop management / VRT prescriptions / remote & proximal sensing / RTK-GNSS & ISOBUS / yield-map QA): Reasons from management-zone heterogeneity, the spatial 4R (right input, rate, place, time), and per-zone margin maps through SSURGO/ECa zone delineation, NDVI/NDRE indices, RTK-GNSS georeferencing, and ISOBUS Task Controller as-applied logs while treating planned-versus-applied divergence, NDVI saturation...

Expert-thinking profile for Precision Engineering Specialist (GD&T / CMM metrology / ultra-precision manufacturing): Reasons from ASME Y14.5 GD&T, GUM uncertainty, and micrometer error budgets through CMM programming (ISO 10360), volumetric compensation, UPDT/STS diamond turning, and ISO 14253 decision rules while treating datum mis- simulation, MMC bonus omission, and CMM program drift as first-class failure modes.

Expert-thinking profile for Precision Medicine Scientist (clinical / research): Reasons from molecular profiles, tiered actionability, tumor purity, and clonal architecture through OncoKB and AMP/ASCO/CAP tiers, Mutect2/STAR-Fusion calling, IGV review, and CPIC pharmacogenomic guidelines while treating FFPE C-to-T deamination, CHIP mimicking somatic drivers, immortal-time bias in real-world data...

Expert-thinking profile for Primatologist (field / observational ethology / conservation / comparative & captive research): Reasons from Tinbergen questions, habituation trade-offs, and phylogenetic comparative trees (TimeTree, Craig 2024) through focal/scan ethograms (BORIS, κ), Raven/Praat vocal repertoires, IUCN SSC great-ape surveys (A.P.E.S.), and CITES/IACUC/IPS health protocols while treating pseudoreplication, anthroponotic...

Query the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biological data including genes, drugs, diseases, phenotypes, and more.

Prisma ORM CLI commands reference covering init, generate, migrate, db, dev, complete, studio, validate, format, debug, and mcp. Use for ORM/database CLI workflows, not the Prisma Platform CLI. Triggers on "prisma init", "prisma generate", "prisma migrate", "prisma db", "prisma complete", "prisma studio", "prisma mcp".

Prisma Compute deployment and hosting guide. Use whenever the user mentions Prisma Compute, `prisma.compute.ts`, `defineComputeConfig`, deploying or hosting a Prisma app, `@prisma/cli app deploy`, `compute:deploy`, `create-prisma --deploy`, `PRISMA_SERVICE_TOKEN`, Compute auth/workspaces, apps/deployments/build logs/domains, localhost vs `0.0.0.0`, deploy port binding, or framework deploy readiness for Hono, Elysia, Next.js, TanStack Start, Astro, Nuxt, Svelte, Nest, Turborepo, or custom/preb...

Required reference for Prisma ORM 7 SQL driver adapter work. Use when implementing or modifying adapters, adding database drivers, or touching SqlDriverAdapter, Transaction, savepoint, result mapping, or DriverAdapterError behavior. Covers current transaction lifecycle, optional savepoint hooks, original database-error preservation, and verification.

Prisma Postgres setup and operations guidance across Console, create-db CLI, Management API, and Management API SDK. Use when creating Prisma Postgres databases, working in Prisma Console, provisioning with create-db/create-pg/create-postgres, or integrating programmatic provisioning with service tokens or OAuth.

Set up private network connectivity to Grafana Cloud — AWS PrivateLink, Azure Private Link, GCP Private Service Connect, and Private Data Source Connect (PDC). Provisions VPC endpoints, private endpoints, or PSC forwarding rules per signal type (metrics / logs / traces / profiles); wires Alloy to push to the private DNS endpoint instead of the public one; verifies private DNS resolution + endpoint approval state. Use when sending telemetry to Grafana Cloud without traversing the public intern...

Expert-thinking profile for Probabilist (theoretical / computational probability): Reasons from Kolmogorov measure spaces through LLN/CLT, martingales, coupling, concentration/LDP, and Lévy/Feller/Itô calculus; uses Durrett/Kallenberg canon, Sage/NumPy/PyMC simulation, and R̂/ESS/IS diagnostics while treating a.s. vs sure, Borel conditioning, OST misuse, and importance-weight explosion as...

Expert-thinking profile for Process Chemist (API/route development / scale-up & reaction engineering / crystallization & PAT / regulatory (ICH Q8-Q11, M7, QbD)): Reasons from mass and energy balances, impurity fate maps, and supersaturation trajectories through RC1 calorimetry, DoE in JMP/MODDE, FBRM/XRPD crystallization tracking, and ICH Q8/Q9/Q11 control strategy while treating exotherm runaway at plant jacket capacity, ICH M7 genotoxic carry-over, polymorph shifts on scale...

Expert-thinking profile for Process Engineer (process design / simulation / commissioning & plant troubleshooting): Reasons from conservation laws, CSTR/PFR selectivity and RTD/Da scale-up through BFD→PFD→P&ID/HAZOP/LOPA/SIL, Aspen Plus/HYSYS HMB, API 520/521 relief and LMTD/F_t exchanger sizing, and lab→pilot→plant commissioning while treating frozen-design violations, simulation-without-data, and BPCS/IPL conflation as...

Unified personal genomic profile report — reads a PatientProfile JSON and synthesizes all skill results into

Expert-thinking profile for Programming Languages Researcher (formal semantics / type systems / mechanized metatheory (Coq/Ott) / verification / POPL-PLDI): Reasons from operational semantics, type-theoretic invariants, and soundness as preservation-plus- progress through Ott/LN-defined calculi, Coq/Isabelle/Agda mechanization, Hindley- Milner inference, and abstract-interpretation Galois connections while treating stuck terms, blame escaping onto well-typed pure terms...

Expert evaluator for Prometheus label strategy on Grafana Cloud. Audits, designs, and improves label schemas using cardinality scoring, access-pattern alignment, static vs. dynamic label rules, histogram bucket discipline, and instrumentation hygiene. Prevents high cardinality at the source — in application code and scrape target labels — without dropping labels that make series unique (which breaks the data). For reducing the cost of series already in Grafana Cloud, routes to the adaptive-me...

Write, refine, run, and QA promptfoo evaluation suites: promptfooconfig.yaml, prompts, providers, vars, tests, assertions, model-graded rubrics, transforms, datasets, exports, and CI gates. Use for non-redteam eval coverage, regression tests, or new eval matrices. Do not use for adversarial redteam plugin or strategy setup.

Configure promptfoo providers or redteam targets for hosted models, live HTTP APIs, Python/JavaScript local scripts, agent SDKs, or multi-input systems. Use when connecting promptfoo to the system under test, mapping vars, auth env vars, request bodies, response transforms, or static-code-derived provider wrappers. Do not use for choosing eval assertions or red team plugins unless a smoke test is needed to verify the connection.

Run, rerun, inspect, and QA promptfoo redteam scans from generated redteam YAML or an existing redteam setup config. Use when executing `promptfoo redteam eval` or `promptfoo redteam run`, exporting results, triaging attack success rate, grader failures, target errors, filter/rerun commands, reports, or CI gates. Do not use for initial provider wiring or for choosing plugins and strategies before generation.

Create or refine promptfoo redteam setup configs: purpose, targets, plugins, strategies, frameworks, multi-input target inputs, policy text, grader guidance, contexts, and static-code-derived target/threat mapping. Use when preparing a red team scan plan from live probes, code evidence, or provider configs, or when generating adversarial test cases for QA. Do not use for basic provider wiring alone or for running/evaluating an already-generated redteam scan.

Write, validate, and optimize PromQL for Prometheus / Grafana Mimir / Grafana Cloud Metrics. Covers `rate` vs `irate` vs `increase`, label matchers and regex, `sum / avg / topk / by / without` aggregation, classic + native `histogram_quantile`, ratios with divide-by-zero guards, `absent` / `changes` for staleness, time offsets and `predict_linear`, recording-rule naming, SLO + burn-rate math, and a cardinality-hunting playbook. Use when writing a metric query, fixing wrong p95s, building an e...

Develop evidence-backed structural and architectural security hardening proposals from vulnerability disclosures, supplied findings, incident or assessment documents, source code, or a completed Codex Security scan. Use when a user asks for systemic improvements, alternatives beyond per-finding patches, before-and-after security architecture views, engineering tradeoff analysis, or an implementation-ready plan for a selected hardening option. Also use automatically after a Codex Security scan...

Expert-thinking profile for Propulsion Engineer (engine design / hot-fire test / combustion stability / rockets-airbreathing-EP / cycle analysis): Reasons from thrust, specific impulse, characteristic velocity c*, thrust coefficient Cf, and NPSH through NASA CEA, RPA and NPSS cycle models, hot-fire thrust stands, and ROCCID/bomb-test stability screening while treating nozzle separation, inducer cavitation, chugging/screech combustion instability, and scramjet...

Expert-thinking profile for Protein Engineer (directed evolution / display selection / biophysical characterization / ML-guided design / developability): Reasons from sequence-structure-function relationships, evolutionary constraint, and multiparameter developability through display selection, ProteinMPNN/RFdiffusion and AlphaFold modeling, SPR/BLI kinetics, and SEC/DSF/CE-SDS characterization while treating aggregation, Tm loss, proteolysis, glycoform mismatch, and...

Run ProteinMPNN inverse folding via NVIDIA NIM to design protein sequences for a target backbone. Use for ProteinMPNN, inverse folding, sequence design, backbone redesign, fixed chains/residues, omit_AAs, sampling temperature, soluble model, hosted NVIDIA API, local Docker, PDB input, and multi-FASTA output.

Differential expression analysis for label-free quantitative (LFQ) intensity data with standard MaxQuant and

Expert-thinking profile for Proteomics Scientist (bottom-up LC-MS/MS / DDA-DIA-TMT- SILAC / differential abundance / FDR & batch control): Reasons from peptide-to-protein inference, acquisition mode, quantification modality, and missing-value mechanism through MaxQuant, FragPipe/MSFragger, DIA-NN/Spectronaut, Skyline, and MSstats/proDA while treating MNAR missingness, batch confounding, TMT co-isolation ratio compression, and keratin/contaminant signal...

Mass spectrometry proteomics QC, quantification, comparative analysis, and export for DDA, DIA, and protein-level result tables.

Expert-thinking profile for Protistologist (microscopy / 18S metabarcoding (PR2/SILVA) / culture & barcoding / HAB monitoring / paleoecology): Reasons from eukaryotic microbial diversity, trophic mode, and morphology-molecule integration through Utermöhl counts, SEM, 18S/V4 metabarcoding with PR2/SILVA, and IQ-TREE/MAFFT phylogenies while treating chimeric ASVs, kleptoplastic mixotroph misclassification, dinoflagellate multi-copy rRNA inflation, and...

Use when working with Protocol Buffer (.proto) files, buf.yaml, buf.gen.yaml, or buf.lock. Covers proto design, buf CLI, gRPC/Connect services, protovalidate constraints, schema evolution, and troubleshooting lint/breaking errors.