Claude Skills by stanfish06

Expert-thinking profile for Paleoceanographer (field / observational marine paleoceanography): Reasons from foraminiferal proxy system science (G. ruber, Cibicidoides, species/size fraction), Barker Mg/Ca cleaning and Anand/Gray calibrations, paired planktic δ¹⁸O–Mg/Ca and LR04 benthic stacks, IODP depth scales and splice ties, and AMOC fingerprints (benthic δ¹³C gradients, εNd, ²³¹Pa/²³⁰Th, sortable silt)...

Expert-thinking profile for Paleoclimatologist (proxy reconstruction / chronology & age modeling / spectral & cyclostratigraphy / model-data comparison (PMIP, DeepMIP)): Reasons from proxy transfer functions, archive integration time, and orbital forcing through Bayesian age-depth modeling (Bacon, OxCal), IntCal20 radiocarbon calibration, PAGES2k compositing, and proxy-equivalent PMIP/DeepMIP comparison while treating age- model uncertainty, non-stationary calibration (CO2...

Expert-thinking profile for Paleontologist (field / museum / computational): Reason from **taphonomic filters** first: biostratinomy, diagenesis, time-averaging, and Signor–Lipps before biostratigraphic correlation, morphometrics, or phylogenetic claims.

Expert-thinking profile for Palliative Care Researcher (clinical trials / symptom science / patient-reported outcomes / health services / reporting (CONSORT-PRO, SPIRIT, PCORI)): Reasons from serious-illness trajectories, multidimensional symptom burden, goals-of-care concordance, and caregiver dyad outcomes through validated PROMs (ESAS-r, IPOS, FACIT-Pal), prespecified MCID responder analysis, mixed-effects and joint survival-QoL models, and CONSORT-PRO/SPIRIT/PCORI reporting while treating...

The workhorse library for in-memory tabular data in Python. Use for loading, cleaning, reshaping, joining, grouping, and analyzing labeled row/column data. Trigger terms include "pandas", "dataframe", "series", "csv", "parquet", "tabular data", "groupby", "pivot", "merge", "data wrangling", "data cleaning". Covers pandas 2.x and the 3.0 changes (Copy-on-Write, default string dtype, PyArrow-backed dtypes).

DataFrame schema validation using pandera. Schema definitions, column checks, and decorator-based validation.

Use when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference posters (Paper2Poster). Use this skill for tasks involving paper dissemination, conference preparation, creating explorable academic homepages, generating video abstracts, or producing print-ready posters from LaTeX or PDF sources.

Route NVIDIA Parabricks pbrun tools, assess GPU/runtime readiness, and provide version-aware command guidance for FASTQ/BAM processing, RNA-seq, variant calling, BAM QC, and GVCF workflows. Do NOT use for inspecting or accelerating whole pipelines — use genomics-workflow-acceleration.

Search the web, extract URL content, enrich datasets, and run deep research using parallel-cli, prioritizing academic and scientific sources. Use for ANY web-related task: looking things up, fetching pages or academic PDFs, bulk data enrichment, and exhaustive multi-source research reports — even when the user doesn't mention 'parallel' or 'web' explicitly.

Expert-thinking profile for Parasitologist (field / laboratory parasitology + public- health surveillance): Reasons from parasite life cycles, WHO NTD program logic, and diagnostic performance (Kato-Katz, qPCR/MIQE, RDTs); troubleshoots microscopy artifacts, MDA surveillance, and anthelmintic resistance.

ParaView scientific visualization for volume data and meshes. Use this skill when Claude needs to: (1) Visualize 3D volume data (CT, MRI, scientific simulations), (2) Create isosurfaces, slices, volume renderings, (3) Visualize vector fields with streamlines/glyphs, (4) Generate publication-quality screenshots, (5) Work with VTK, EXODUS, RAW, or other scientific data formats

Expert-thinking profile for Particle Physicist (experimental / phenomenological high- energy physics): Reasons from SM gauge structure, parton PDFs, and detector response through ATLAS/CMS/LHCb/Belle II/DUNE workflows, Geant4+Pythia/MG5 simulation, HistFactory/Combine/pyhf likelihoods, and HEPData/Rivet preservation while treating LEE/global significance, JES/pile-up, fake leptons, and flux×cross-section systematics as...

N-day 补丁差分到利用。从厂商发布的补丁里反推漏洞点、写 PoC、做成可用的攻击模块。 适用场景：已知 CVE 编号但只有补丁没有 PoC、SRC/红队需要打击未及时更新的资产、N-day 武器化、Patch Tuesday 跟进。 核心方法：拿 before/after 二进制 → 对齐符号 → 二进制 diff → 看新增的安全检查反推 bug class → 写 PoC 触发漏洞。 触发关键词：N-day、Nday、补丁差分、patch diff、patch tuesday、1day、binary diff 漏洞、bindiff 利用、ghidriff、Diaphora、补丁分析、CVE 复现、漏洞还原、补丁反推、N-day 武器化。

Full-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed immunofluorescence (CODEX, Vectra), nucleus segmentation, tissue graph construction, and ML model training on pathology data. Supports 160+ slide formats. For simple tile extraction from H&E slides, histolab may be simpler.

Expert-thinking profile for Pathologist (clinical / research): Reasons from H&E morphology, pretest-probability differentials, and pre-analytic integrity through CAP synoptic protocols, staged IHC and FISH panels, WHO/AJCC grading and staging, and Bethesda/Paris/Milan cytology systems while treating crush artifact, fixation/decalcification failure, single-frozen-section overcall...

Gene-set pathway enrichment analysis using Enrichr — queries KEGG, GO (BP/MF/CC), Reactome, WikiPathways, MSigDB, and Disease Ontology. Produces ranked pathway tables, interactive bubble charts, and a reproducible Markdown report.

Expert-thinking profile for Pavement Engineer (mechanistic-empirical design / flexible & rigid pavements / NDE & forensics / asset management (MEPDG, FWD)): Reasons from layered-elastic stress/strain, traffic spectra, climate, and material temperature- dependence through AASHTOWare Pavement ME (MEPDG) hierarchical inputs, FWD deflection- basin backcalculation with GPR/core thickness, binder PG selection, and LTPP- calibrated transfer functions, while treating mis-specified...

Expert-thinking profile for Pedologist (soil survey / pedon morphology / classification (USDA Taxonomy, WRB) / micromorphology / digital soil mapping): Reasons from CLORPT factors, genetic horizons, and catenary position through the USDA Field Book, Soil Taxonomy and WRB 2022 keys, XRD clay mineralogy, micromorphology, and NASIS/SSURGO correlation while treating colluvial-versus-illuvial Bt confusion, lithologic discontinuities, surface-color-alone drainage calls...

Systematic peer review toolkit. Evaluate methodology, statistics, design, reproducibility, ethics, figure integrity, reporting standards, for manuscript and grant review across disciplines.

Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients, building hybrid quantum-classical models, or needing device portability across IBM/Google/Rigetti/IonQ. Best for variational algorithms (VQE, QAOA), quantum neural networks, and integration with PyTorch or JAX. For hardware-specific optimizations use qiskit (IBM) or cirq (Google); for open quantum systems use qutip.

主动渗透测试工具链。覆盖信息收集、端口扫描、漏洞扫描、Web 渗透、SQL 注入、目录爆破、密码破解等场景。 通过 MCP server（pentestMCP / mcp-security-hub）将 20+ 安全工具暴露给 AI agent。 触发关键词：渗透测试、端口扫描、Nmap、漏洞扫描、Nuclei、SQL 注入、SQLMap、目录爆破、FFUF、密码破解、Hashcat、信息收集、子域名、Web 渗透、ZAP、Burp。

实战 SRC / 众测 / Bug bounty 漏洞挖掘工作流 skill。包含：5 阶段方法论（intake → recon → enum → hunt → report）、19 个攻击类 playbook（SQLi/XSS/RCE/SSRF/IDOR/CSRF/Path Traversal/File Upload/SSTI/XXE/Race/HTTP Smuggling/OAuth/JWT/SAML/GraphQL/Mobile/LLM/DoS）、305 个结构化 payload、263 个 WAF/EDR 绕过变体、2887 份 HackerOne 真实 High/Critical 已披露案例、77,000+ WooYun 案例统计、国产 OA / 中间件指纹库、银行 / 电信行业垂直 playbook。当用户提到 "src 挖洞 / src 漏洞挖掘 / bug bounty / 众测 / hackerone / 漏洞赏金 / SRC / 任意 X 漏洞 / 渗透测试" 或问"如何挖某个目标 / 怎么测某个 API / 如何绕过 WAF" 时触发。

Optimizes application performance across frontend, backend, queries, and databases. Use when performance requirements exist, when you suspect performance regressions, when Core Web Vitals or load times need improvement, when N+1 query patterns need fixing, or when profiling reveals bottlenecks.

Expert-thinking profile for Petrochemist (refinery process chemistry / crude assay / fuels & lubricants spec testing / catalyst performance / standards (ASTM D02, EN 228/590)): Reasons from boiling range, hydrocarbon class, sulfur/nitrogen speciation, and octane/cetane drivers through SimDist and PIONA/SARA group-type analysis, CFR- engine RON/MON and cetane testing, refinery LP models, and ASTM/EN spec methods, while treating light-ends loss, assay mismatch versus plant yields, catalyst...

Expert-thinking profile for Petroleum Geologist (exploration / appraisal / development geoscience): Reasons from petroleum-system elements (kerogen I–IV, kitchens, critical moment), trap/spill-point and SGR fault seal, AVO/DHI and inversion QC, Archie/Simandoux/NMR petrophysics with Monte Carlo STOIIP, and PetroMod 1D–3D charge migration; treats tuning flat spots, post-trap charge, and uncorrected Archie Sw as...

Expert-thinking profile for Petroleum / Reservoir Engineer (field development / dynamic subsurface (MBE, PTA, simulation, reserves)): Reasons from Darcy flow, Havlena–Odeh MBE, Fetkovich/VEH aquifers, Horner/derivative PTA, Buckley–Leverett/Welge floods, Eclipse/CMG/tNavigator history match, PRMS/SEC reserves (P90/P50/P10), and SPE11 CO₂ benchmarks; treats transient Arps b>1, negative-skin grid artifacts, and microseismic≠SRV as first-class failure...

Expert-thinking profile for Petrologist (igneous/metamorphic petrology / petrography / EPMA-LA-ICP-MS microanalysis / thermodynamic modeling (Perple_X, THERMOCALC, MELTS)...): Reasons from Gibbs free energy minimization, the phase rule, and protolith-specific facies assemblages through petrography, EPMA/LA-ICP-MS microanalysis, pseudosections (Perple_X, THERMOCALC, MELTS), and classical thermobarometry while treating retrograde overprinting, serpentinization, propylitic alteration mimicking...

Expert-thinking profile for Phage Biologist (wet-lab / phage isolation, genomics, and phage-therapy R&D): Reasons from lytic vs lysogenic cycles, PFU/MOI/Poisson kinetics, one-step growth and EOP host-range matrices, PhagesDB/Phamerator/Pharokka genomics, and CRISPR/restriction escape—treating prophage immunity, defective particles, and therapy integrase scans as first-class failure modes.

Expert-thinking profile for Pharmaceutical Formulation Scientist (formulation development / QbD-CMC / solid-state & dissolution / regulatory (ICH Q8, USP, Module 3.2.P)): Anchor every decision in the QTPP and critical quality attributes (CQAs): assay, Classify the API before choosing a technology path. Use BCS (solubility vs.

Expert-thinking profile for Pharmacokineticist (clinical / research): Reasons from mass balance, exposure-response, and separation of structural from statistical models through NCA in Phoenix WinNonlin, mixed-effects popPK in NONMEM, PBPK in Simcyp/GastroPlus, and VPC diagnostics while treating BLQ mishandling, ETA shrinkage, over-parameterization for small n, and unit/analyte/matrix...

Expert-thinking profile for Pharmacologist (wet-lab / in vitro pharmacology / drug discovery): Reasons from receptor occupancy, Black–Leff τ, EC50/IC50/Kd/Ki distinctions, Schild/Cheng–Prusoff antagonism, allosteric PAM/NAM cooperativity, GPCR bias, and PK/PD linkage; interprets binding/functional/HTS via GtoPdb/ChEMBL while treating spare receptors, radioligand depletion, and assay autofluorescence as...

Expert-thinking profile for Pharmacovigilance Scientist (regulatory / drug safety surveillance (clinical & post-marketing)): Reasons from ICSR validity, MedDRA/SMQ coding, seriousness/expectedness/listedness, WHO-UMC causality, and PRR/ROR/IC/EBGM signal workflows through E2B(R3), EudraVigilance/FAERS/VigiBase, GVP Modules VI–IX, and PSUR/PBRER/RMP while treating duplicates, MLM scope, innocent-bystander confounding, and Weber/stimulated...

Pharmacogenomic report from DTC genetic data (23andMe/AncestryDNA) — 12 genes, 31 SNPs, 51 drugs

Implement 2D browser games with Phaser. Use when the user wants a Phaser, TypeScript, and Vite stack for scenes, gameplay systems, cameras, sprite animation, and DOM-overlay HUD patterns.

Debug LLM applications using the Phoenix CLI. Fetch traces, analyze errors, structure trace review with open coding and axial coding, inspect datasets, review experiments, query annotation configs, and use the GraphQL API. Use whenever the user is analyzing traces or spans, investigating LLM/agent failures, deciding what to do after instrumenting an app, building failure taxonomies, choosing what evals to write, or asking "what's going wrong", "what kinds of mistakes", or "where do I focus" —...

Expert-thinking profile for Photochemist (photophysics / excited-state spectroscopy / actinometry / time-resolved (TCSPC, flash photolysis) / photoredox & solar chemistry): Reasons from Jablonski diagrams, quantum yields, and excited-state potential energy surfaces through ferrioxalate actinometry, TCSPC and transient-absorption flash photolysis, Stern–Volmer quenching, and TDDFT/CASPT2 calculations while treating inner-filter distortion, oxygen-sensitive triplet pathways...

Expert-thinking profile for Photonics Engineer (design / simulation / characterization / optical systems & PIC): Reasons from Maxwell modes, FSR–Q–coupling trade-offs, and optical power/loss budgets; designs PICs and free-space systems with FDTD/INTERCONNECT/Zemax/GDSFactory and certifies links with OLTS/OTDR/M² while treating mesh dispersion errors, TE/TM birefringence, APC/PC connector mismatch, OTDR ghost/gainer events, and...

Expert-thinking profile for Photonics Scientist (research / integrated photonics / nonlinear optics): Reasons from guided-wave dispersion, ring FSR–Q–coupling, and FWM phase matching; designs waveguides, lasers, and modulators with Lumerical MODE/FDTD/CHARGE/INTERCONNECT while treating dispersive FSR mismatch, TPA/FCA/XPM detuning, mesh dispersion, etalon ripples, and thermal bistability as first-class failure modes.

Expert-thinking profile for Photovoltaics / Solar Cell Scientist (device characterization / loss-budget analysis / c-Si & perovskite tandem / module reliability (IEC 61215/61730)): Reasons from the Shockley-Queisser detailed-balance limit and the diode coupling of Voc, Jsc, FF, and Rs/Rsh through light I-V, Suns-Voc implied Voc, EQE integration, lifetime mapping (QSSPC, μ-PCD, DLTS), and IEC 60904/61215 qualification while treating spectral mismatch, surface-recombination and shunt losses...

Expert-thinking profile for Phylogeneticist (computational / molecular & morphological systematics): Reasons from Hennigian homology and MSC/coalescent-aware species trees through MAFFT/trimAl alignment, IQ-TREE 3 ModelFinder and gCF/sCF/gDF discordance, ASTRAL/ASTRAL-Pro 2/BEAST2 FBD dating, bPP/BFD* delimitation, and MIAPA/TreeBASE provenance while treating LBA, mis-rooting, compositional heterogeneity, gene flow...

End-to-end ML phylogenetic tree inference — MSA, trimming, ModelFinder, IQ-TREE2/RAxML-NG.

Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.

Router for NVIDIA NuRec/NRE: USDZ rendering, NCore conversion, 3DGS, gRPC sensor sim, PhysicalAI HF datasets. Do NOT use for SimReady or infra setup.

Expert-thinking profile for Physical Chemist (wet-lab / calorimetry (DSC, ITC) / spectroscopy (FTIR, Raman, UV-vis) / kinetics / statistical thermodynamics): Reasons from state functions, partition functions, rate laws, and selection rules through Eyring and van't Hoff fits, DSC/ITC calorimetry, and stopped-flow spectroscopy anchored to NIST thermochemical data, while treating inner-filter and aggregation artifacts, curved Arrhenius plots from mechanism change, and...

Expert-thinking profile for Physical Oceanographer (observational / field / computational ocean physics): Reasons from geostrophy, thermal wind, PV, and Ekman/Sverdrup balances; integrates GO-SHIP/CCHDO sections, Argo DMQC, DUACS/CMEMS altimetry, and ROMS/MITgcm/NEMO validation while treating reference-level transport ambiguity, Argo conductivity drift, and MDT/alias artifacts as first-class failure modes.

Expert-thinking profile for Physician-Scientist (clinical / translational / basic and patient-oriented research): Reasons across the bedside–bench cycle and T0–T4 spectrum; navigates PSTP/ABIM pathways, K08/K23/R01 funding, IRB/IND/IDE sponsor-investigator duties, and CONSORT/SPIRIT reporting while treating protected-time loss and preclinical irreproducibility as first-class failure modes.

Use when planning Zoom integrations.

Use when choosing products.

Expert-thinking profile for Planetary Geologist (remote sensing / GIS / planetary surfaces (Mars, Moon)): Reasons from stratigraphy and landform genesis through ISIS/GDAL/JMARS/ArcGIS, CraterTools/CSFD Tools/CraterStats2 chronology, CRISM/M3/THEMIS spectroscopy with SPLib/RELAB, and PDS archives while treating secondaries, projection/datums, and production-function choice as first-class failure modes.

Expert-thinking profile for Planetary Scientist (solar-system / remote-sensing & in situ / exoplanet detection-characterization / mission archives (PDS, SPICE)): Expert profile for planetary scientist — see AGENTS.md for field-specific methods and failure modes.