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Claude Skills by mdbabumiamssm
github.com/mdbabumiamssm1,578 skills3 installs3,530 views
- Skill Installer--> ---name: skill-installer description: Install Codex skills into $CODEX_HOME/skills from a curated list or a GitHub repo path. Use when a user asks to list installable skills, install a curated skill, or install a skill from another repo (including private repos). metadata: short-description: Install curated skills from openai/skills or other repos keywords: - skill-installer - automation - biomedical measurable_outcome: execute task with >95% success rate. allowed-tools: - read_file - run...Votes: 0GitHub stars: 6
- General Productivity--> --- name: 'code-reviewer' description: 'Provides comprehensive code review feedback based on best practices, style guides, and potential bug detection. Use when the user requests a code review, asks for improvements to code, or needs to ensure code quality.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill helps to perform thorough code reviews, focusing on readability, maintainabilit...Votes: 0GitHub stars: 6
- Clinical Trial Protocol--> --- name: clinical-trial-protocol-skill description: Generate clinical trial protocols for medical devices or drugs. This skill should be used when users say "Create a clinical trial protocol", "Generate protocol for [device/drug]", "Help me design a clinical study", "Research similar trials for [intervention]", or when developing FDA submission documentation for investigational products. measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-...Votes: 0GitHub stars: 6
- Instrument Data To Allotrope--> --- name: instrument-data-to-allotrope description: Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full ASM JSON, flattened CSV for easy import, and exportable Python code for data engineers. Common triggers include converting ...Votes: 0GitHub stars: 6
- Nextflow Development--> --- name: nextflow-development description: Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation. measurable_outcome: Execute skill workflow successfully with valid output within 15 minut...Votes: 0GitHub stars: 6
- Scientific Problem Selection--> --- name: scientific-problem-selection description: This skill should be used when scientists need help with research problem selection, project ideation, troubleshooting stuck projects, or strategic scientific decisions. Use this skill when users ask to pitch a new research idea, work through a project problem, evaluate project risks, plan research strategy, navigate decision trees, or get help choosing what scientific problem to work on. Typical requests include "I have an idea for a pr...Votes: 0GitHub stars: 6
- Scvi Tools--> --- name: scvi-tools description: Deep learning for single-cell analysis using scvi-tools. This skill should be used when users need (1) data integration and batch correction with scVI/scANVI, (2) ATAC-seq analysis with PeakVI, (3) CITE-seq multi-modal analysis with totalVI, (4) multiome RNA+ATAC analysis with MultiVI, (5) spatial transcriptomics deconvolution with DestVI, (6) label transfer and reference mapping with scANVI/scArches, (7) RNA velocity with veloVI, or (8) any deep learning...Votes: 0GitHub stars: 6
- Single Cell Rna Qc--> --- name: single-cell-rna-qc description: Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or following scverse/scanpy best practices for single-cell analysis. measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell...Votes: 0GitHub stars: 6
- Doc--> --- name: "doc" description: "Use when the task involves reading, creating, or editing `.docx` documents, especially when formatting or layout fidelity matters; prefer `python-docx` plus the bundled `scripts/render_docx.py` for visual checks." measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command ---Votes: 0GitHub stars: 6
- Gh Fix Ci--> --- name: "gh-fix-ci" description: "Use when a user asks to debug or fix failing GitHub PR checks that run in GitHub Actions; use `gh` to inspect checks and logs, summarize failure context, draft a fix plan, and implement only after explicit approval. Treat external providers (for example Buildkite) as out of scope and report only the details URL." measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command ---Votes: 0GitHub stars: 6
- Imagegen--> --- name: "imagegen" description: "Use when the user asks to generate or edit images via the OpenAI Image API (for example: generate image, edit/inpaint/mask, background removal or replacement, transparent background, product shots, concept art, covers, or batch variants); run the bundled CLI (`scripts/image_gen.py`) and require `OPENAI_API_KEY` for live calls." measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_sh...Votes: 0GitHub stars: 6
- Openai Docs--> --- name: "openai-docs" description: "Use when the user asks how to build with OpenAI products or APIs and needs up-to-date official documentation with citations (for example: Codex, Responses API, Chat Completions, Apps SDK, Agents SDK, Realtime, model capabilities or limits); prioritize OpenAI docs MCP tools and restrict any fallback browsing to official OpenAI domains." measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_fi...Votes: 0GitHub stars: 6
- Pdf--> --- name: "pdf" description: "Use when tasks involve reading, creating, or reviewing PDF files where rendering and layout matter; prefer visual checks by rendering pages (Poppler) and use Python tools such as `reportlab`, `pdfplumber`, and `pypdf` for generation and extraction." measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command ---Votes: 0GitHub stars: 6
- Playwright--> --- name: "playwright" description: "Use when the task requires automating a real browser from the terminal (navigation, form filling, snapshots, screenshots, data extraction, UI-flow debugging) via `playwright-cli` or the bundled wrapper script." measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- Drive a real browser from the terminal using `playwright-cli`. Prefer the bundled wrapper script so t...Votes: 0GitHub stars: 6
- Screenshot--> --- name: "screenshot" description: "Use when the user explicitly asks for a desktop or system screenshot (full screen, specific app or window, or a pixel region), or when tool-specific capture capabilities are unavailable and an OS-level capture is needed." measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- Follow these save-location rules every time: 1) If the user specifies a path, save there. ...Votes: 0GitHub stars: 6
- Security Best Practices--> --- name: "security-best-practices" description: "Perform language and framework specific security best-practice reviews and suggest improvements. Trigger only when the user explicitly requests security best practices guidance, a security review/report, or secure-by-default coding help. Trigger only for supported languages (python, javascript/typescript, go). Do not trigger for general code review, debugging, or non-security tasks." measurable_outcome: Execute skill workflow successfully ...Votes: 0GitHub stars: 6
- Sora--> --- name: "sora" description: "Use when the user asks to generate, remix, poll, list, download, or delete Sora videos via OpenAI\u2019s video API using the bundled CLI (`scripts/sora.py`), including requests like \u201cgenerate AI video,\u201d \u201cSora,\u201d \u201cvideo remix,\u201d \u201cdownload video/thumbnail/spritesheet,\u201d and batch video generation; requires `OPENAI_API_KEY` and Sora API access." measurable_outcome: Execute skill workflow successfully with valid output within...Votes: 0GitHub stars: 6
- Speech--> --- name: "speech" description: "Use when the user asks for text-to-speech narration or voiceover, accessibility reads, audio prompts, or batch speech generation via the OpenAI Audio API; run the bundled CLI (`scripts/text_to_speech.py`) with built-in voices and require `OPENAI_API_KEY` for live calls. Custom voice creation is out of scope." measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- Gener...Votes: 0GitHub stars: 6
- Spreadsheet--> --- name: "spreadsheet" description: "Use when tasks involve creating, editing, analyzing, or formatting spreadsheets (`.xlsx`, `.csv`, `.tsv`) using Python (`openpyxl`, `pandas`), especially when formulas, references, and formatting need to be preserved and verified." measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command ---Votes: 0GitHub stars: 6
- Transcribe--> --- name: "transcribe" description: "Transcribe audio files to text with optional diarization and known-speaker hints. Use when a user asks to transcribe speech from audio/video, extract text from recordings, or label speakers in interviews or meetings." measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- Transcribe audio using OpenAI, with optional speaker diarization when requested. Prefer the bu...Votes: 0GitHub stars: 6
- React Best Practices--> --- name: 'react-performance-optimizer' description: 'Analyzes React/Next.js code for performance bottlenecks, focusing on waterfalls, bundle size, and rendering efficiency.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill assists in identifying and resolving common performance issues in React and Next.js applications. It applies rules from Vercel's engineering best practices.Votes: 0GitHub stars: 6
- Artifacts Builder--> --- name: 'artifacts-builder' description: 'Suite of tools for creating elaborate, multi-component claude.ai HTML artifacts using modern frontend web technologies (React, Tailwind CSS, shadcn/ui). Use for complex artifacts requiring state management, routing, or shadcn/ui components - not for simple single-file HTML/JSX artifacts.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- To build powerf...Votes: 0GitHub stars: 6
- Changelog Generator--> --- name: 'changelog-generator' description: 'Automatically creates user-facing changelogs from git commits by analyzing commit history, categorizing changes, and transforming technical commits into clear, customer-friendly release notes. Turns hours of manual changelog writing into minutes of automated generation.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill transforms technical...Votes: 0GitHub stars: 6
- Competitive Ads Extractor--> --- name: 'competitive-ads-extractor' description: 'Extracts and analyzes competitors'' ads from ad libraries (Facebook, LinkedIn, etc.) to understand what messaging, problems, and creative approaches are working. Helps inspire and improve your own ad campaigns.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill extracts your competitors' ads from ad libraries and analyzes what's worki...Votes: 0GitHub stars: 6
- Content Research Writer--> --- name: 'content-research-writer' description: 'Assists in writing high-quality content by conducting research, adding citations, improving hooks, iterating on outlines, and providing real-time feedback on each section. Transforms your writing process from solo effort to collaborative partnership.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill acts as your writing partner, helpin...Votes: 0GitHub stars: 6
- Domain Name Brainstormer--> --- name: 'domain-name-brainstormer' description: 'Generates creative domain name ideas for your project and checks availability across multiple TLDs (.com, .io, .dev, .ai, etc.). Saves hours of brainstorming and manual checking.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill helps you find the perfect domain name for your project by generating creative options and checking what's ...Votes: 0GitHub stars: 6
- File Organizer--> --- name: 'file-organizer' description: 'Intelligently organizes your files and folders across your computer by understanding context, finding duplicates, suggesting better structures, and automating cleanup tasks. Reduces cognitive load and keeps your digital workspace tidy without manual effort.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill acts as your personal organization ass...Votes: 0GitHub stars: 6
- Image Enhancer--> --- name: 'image-enhancer' description: 'Improves the quality of images, especially screenshots, by enhancing resolution, sharpness, and clarity. Perfect for preparing images for presentations, documentation, or social media posts.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill takes your images and screenshots and makes them look better—sharper, clearer, and more professional.Votes: 0GitHub stars: 6
- Invoice Organizer--> --- name: 'invoice-organizer' description: 'Automatically organizes invoices and receipts for tax preparation by reading messy files, extracting key information, renaming them consistently, and sorting them into logical folders. Turns hours of manual bookkeeping into minutes of automated organization.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill transforms chaotic folders of invo...Votes: 0GitHub stars: 6
- Lead Research Assistant--> --- name: 'lead-research-assistant' description: 'Identifies high-quality leads for your product or service by analyzing your business, searching for target companies, and providing actionable contact strategies. Perfect for sales, business development, and marketing professionals.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill helps you identify and qualify potential leads for you...Votes: 0GitHub stars: 6
- Mcp Builder--> --- name: 'mcp-builder' description: 'Guide for creating high-quality MCP (Model Context Protocol) servers that enable LLMs to interact with external services through well-designed tools. Use when building MCP servers to integrate external APIs or services, whether in Python (FastMCP) or Node/TypeScript (MCP SDK).' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command ---Votes: 0GitHub stars: 6
- Meeting Insights Analyzer--> --- name: 'meeting-insights-analyzer' description: 'Analyzes meeting transcripts and recordings to uncover behavioral patterns, communication insights, and actionable feedback. Identifies when you avoid conflict, use filler words, dominate conversations, or miss opportunities to listen. Perfect for professionals seeking to improve their communication and leadership skills.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_f...Votes: 0GitHub stars: 6
- Notion Knowledge Capture--> --- name: 'notion-knowledge-capture' description: 'Transforms conversations and discussions into structured documentation pages in Notion. Captures insights, decisions, and knowledge from chat context, formats appropriately, and saves to wikis or databases with proper organization and linking for easy discovery.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- Transforms conversations, discussi...Votes: 0GitHub stars: 6
- Notion Meeting Intelligence--> --- name: 'notion-meeting-intelligence' description: 'Prepares meeting materials by gathering context from Notion, enriching with Claude research, and creating both an internal pre-read and external agenda saved to Notion. Helps you arrive prepared with comprehensive background and structured meeting docs.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- Prepares you for meetings by gathering c...Votes: 0GitHub stars: 6
- Notion Research Documentation--> --- name: 'notion-research-documentation' description: 'Searches across your Notion workspace, synthesizes findings from multiple pages, and creates comprehensive research documentation saved as new Notion pages. Turns scattered information into structured reports with proper citations and actionable insights.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- Enables comprehensive research workf...Votes: 0GitHub stars: 6
- Notion Spec To Implementation--> --- name: 'notion-spec-to-implementation' description: 'Turns product or tech specs into concrete Notion tasks that Claude code can implement. Breaks down spec pages into detailed implementation plans with clear tasks, acceptance criteria, and progress tracking to guide development from requirements to completion.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- Transforms specifications into a...Votes: 0GitHub stars: 6
- Raffle Winner Picker--> --- name: 'raffle-winner-picker' description: 'Picks random winners from lists, spreadsheets, or Google Sheets for giveaways, raffles, and contests. Ensures fair, unbiased selection with transparency.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill randomly selects winners from lists, spreadsheets, or Google Sheets for giveaways and contests.Votes: 0GitHub stars: 6
- Slack Gif Creator--> --- name: 'slack-gif-creator' description: 'Toolkit for creating animated GIFs optimized for Slack, with validators for size constraints and composable animation primitives. This skill applies when users request animated GIFs or emoji animations for Slack from descriptions like "make me a GIF for Slack of X doing Y".' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- A toolkit for creating animat...Votes: 0GitHub stars: 6
- Video Downloader--> --- name: 'video-downloader' description: 'Downloads videos from YouTube and other platforms for offline viewing, editing, or archival. Handles various formats and quality options.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill downloads videos from YouTube and other platforms directly to your computer.Votes: 0GitHub stars: 6
- Single Cell Rna Qc--> --- name: single-cell-rna-qc description: Perform quality control on single-cell RNA-seq data (.h5ad, 10x .h5, or 10x directories) using scverse best practices, MAD-based filtering (log1p counts/genes, high-tail MT%), and generate filtered AnnData plus QC plots and summary JSON. Use when users request scRNA-seq QC, filtering low-quality cells, data quality assessment, or QC visualizations. measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed...Votes: 0GitHub stars: 6
- Algorithmic Trading--> <!-- AUTHOR_SIGNATURE: 9a7f3c2e-MD-BABU-MIA-2026-MSSM-SECURE -->Votes: 0GitHub stars: 6
- StackSingleCellIclAgent Agent--> <!-- AUTHOR_SIGNATURE: 9a7f3c2e-MD-BABU-MIA-2026-MSSM-SECURE --> --- name: 'stack-single-cell-icl-agent' description: 'Agent for Arc Institute Stack, a single-cell foundation model that performs in-context learning at inference time without per-task fine-tuning.' measurable_outcome: 'Execute skill workflow successfully with valid output within 15 minutes.' allowed-tools: - read_file - run_shell_command - web_fetch ---Votes: 0GitHub stars: 6
- Multimodal Medical Analysis--> --- name: gemini-multimodal-medical-analysis description: Analyzes multimodal medical inputs (X-ray, MRI, Pathology slides + Clinical notes) using Gemini. keywords: - multimodal - radiology - pathology - vision - gemini - health-stack measurable_outcome: Generates multimodal diagnostic insights in under 10 seconds. license: MIT metadata: author: AI Agentic Skills Team version: "1.0.0" compatibility: - system: Python 3.10+ allowed-tools: - read_file - gemini_vision_api --- A specialized sk...Votes: 0GitHub stars: 6
- AAV Vector Design Agent--> --- name: 'aav-vector-design-agent' description: 'AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **AAV Vector Design Agent** provides AI-driven design of adeno-associated virus vectors for gene therapy applications. It covers capsid selection a...Votes: 0GitHub stars: 6
- CNV Caller Agent--> --- name: 'cnv-caller-agent' description: 'AI-enhanced copy number variation calling and analysis from sequencing data for cancer genomics, constitutional CNV detection, and chromosomal aberration characterization.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **CNV Caller Agent** provides comprehensive AI-enhanced copy number variation analysis from WGS, WES, and targeted sequencing for...Votes: 0GitHub stars: 6
- CRISPR Design Agent--> --- name: crispr-guide-design description: Guide foundry keywords: - CRISPR - sgRNA - Doench - off-target - oligos measurable_outcome: Return the requested number of guides (default ≥4) with efficiency + specificity scores, coordinates, and cloning oligos within 10 minutes per gene. license: MIT metadata: author: CRISPR-GPT Team version: "1.0.0" compatibility: - system: Python 3.10+ allowed-tools: - run_shell_command - read_file --- Automate sgRNA selection, scoring, off-target evaluation...Votes: 0GitHub stars: 6
- CRISPR Prediction--> --- name: 'crispr-offtarget-predictor' description: 'Predicts potential off-target sites for a given sgRNA sequence using mismatch analysis.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- This skill identifies potential off-target binding sites for a specific sgRNA sequence. It helps researchers assess the specificity of their CRISPR design.Votes: 0GitHub stars: 6
- CellFree RNA Agent--> --- name: 'cellfree-rna-agent' description: 'AI-powered cell-free RNA analysis from liquid biopsy for cancer detection, tissue-of-origin identification, and non-invasive transcriptomic profiling.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Cell-Free RNA Analysis Agent** provides comprehensive analysis of circulating cell-free RNA (cfRNA) from plasma and other biofluids for cancer det...Votes: 0GitHub stars: 6
- Epigenomics MethylGPT Agent--> --- name: 'epigenomics-methylgpt-agent' description: 'AI-powered DNA methylation analysis using MethylGPT foundation models for epigenomic profiling, differential methylation detection, and cancer epigenome characterization.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Epigenomics MethylGPT Agent** leverages foundation models for comprehensive DNA methylation analysis. It integrates M...Votes: 0GitHub stars: 6
- Gene Panel Design Agent--> --- name: 'gene-panel-design-agent' description: 'AI-powered design of targeted gene panels for clinical and research applications including cancer diagnostics, pharmacogenomics, and rare disease testing.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Gene Panel Design Agent** provides AI-driven design of targeted sequencing panels for clinical diagnostics, cancer profiling, pharmacogen...Votes: 0GitHub stars: 6