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Claude Skills by FOURTEEN1416
github.com/FOURTEEN1416951 skills0 installs77 views
- YeetUse only when the user explicitly asks to stage, commit, push, and open a GitHub pull request in one flow using the GitHub CLI (`gh`).Votes: 0GitHub stars: 10
- EditaplotAnalyze local scientific CSV, TXT, XLS, or XLSX data; recommend publication-informed charts and Chinese scientific palettes; freeze a reproducible plan; and automate editable figures through a callable local Origin/OriginPro installation on physical Windows 10/11 x64. Use for beginner “drop in a file and draw it” requests; XPS, XRD, XAS, PL/TRPL, DSC, NMR, FTIR/IR, UV-Vis, electrochemistry, medical/AI evidence, distribution, relationship, error-bar, bar, stacked, pie, Sankey, radar, heatmap, ...Votes: 0GitHub stars: 10
- Scientific Figure MakingCovers publication-ready matplotlib figures for academic papers, slides, and reports—bars, trends, scatter, heatmaps, and multi-panel layouts—with this repository’s house style, print/vector export conventions, and parity with figures4papers demos. Use when the user is finalizing or creating such figures in matplotlib. Do not use for interactive dashboards or web viz (Plotly, Altair, Bokeh), exploratory-only plots without a publication target, dominant 3D or geographic mapping, or Illustrator...Votes: 0GitHub stars: 10
- Latex Document SkillUniversal LaTeX document skill: create, compile, and convert any document to professional PDF with PNG previews. Supports resumes, reports, cover letters, invoices, academic papers, theses/dissertations, academic CVs, presentations (Beamer), scientific posters, formal letters, exams/quizzes, books, cheat sheets, reference cards, exam formula sheets, fillable PDF forms (hyperref form fields), conditional content (etoolbox toggles), mail merge from CSV/JSON (Jinja2 templates), version diffing (...Votes: 0GitHub stars: 10
- Arxiv Paper WriterWrites ML/AI review and survey papers for arXiv using the IEEEtran LaTeX template with verified BibTeX citations. Triggers when the deliverable is a review paper, literature survey, or when an existing LaTeX project needs citation validation or repair.Votes: 0GitHub stars: 10
- Check CollaboratorsVerify that Gemini CLI and Claude Code CLI are installed, authenticated, and API-reachable before starting collaboration workflows.Votes: 0GitHub stars: 10
- Collaborating With ClaudeUse the Claude Code CLI as a depth-analysis co-pilot for paper-from-zero. Primary role: claim tree compression, logical hole detection, evidence sufficiency audit, and review/empirical routing judgment. Also supports generic code collaboration as fallback.Votes: 0GitHub stars: 10
- Collaborating With GeminiUse the Gemini CLI as a breadth-exploration co-pilot for paper-from-zero. Primary role: candidate direction expansion, adjacent work scanning, keyword cluster generation, and alternative framing proposals. Also supports generic code collaboration as fallback.Votes: 0GitHub stars: 10
- Empirical Paper WriterDraft IEEE-style empirical ML/AI papers from a structured research contract. Builds experiment plans, section skeletons, placeholder-safe results, and a near-submission draft without fabricating evidence.Votes: 0GitHub stars: 10
- Latex Rhythm RefinerPost-process LaTeX project prose to improve readability through varied sentence and paragraph lengths. Removes filler phrases and unnecessary transitions while preserving all citations and semantic meaning.Votes: 0GitHub stars: 10
- Paper From ZeroRoute a fixed research topic into a rigorous paper-generation workflow. Handles active literature search, innovation framing, contribution/evidence planning, and routes to either the review writer or empirical writer skill.Votes: 0GitHub stars: 10
- Results BackfillBack-fill verified experiment results into an existing empirical paper draft. Resolves placeholders, upgrades hypotheses to factual claims, generates figures/tables, drafts abstract, and runs rhythm refinement + QA.Votes: 0GitHub stars: 10
- Nature Academic SearchMulti-source literature search, citation verification, strict independent other-citation audits, article-level citation metric tables, influential citer profiling with citation-context extraction, MeSH search strategy, citation file management (.nbib/.ris/.bib conversion), and reference management (BibTeX, related articles, ID conversion) via MCP tools (PubMed, CrossRef, arXiv, Scopus, ScienceDirect). Use for coordinated literature workflows beyond one MCP call, including 文献检索、 查文献、找文献、文献综述检索...Votes: 0GitHub stars: 10
- Nature CitationAdd strict Nature/CNS citations to manuscript text by splitting long passages into citable segments, searching only accepted flagship and subjournal titles from Nature Portfolio, the AAAS Science family, and Cell Press, filtering by publication time range, and exporting one reference-manager-ready output by default. Use this skill whenever the user asks to input text and automatically get references, add citations to a paragraph/manuscript, find Nature-series or CNS support for statements, cr...Votes: 0GitHub stars: 10
- Nature DataPrepare, audit, or revise Nature-ready Data Availability statements, data repository plans, dataset citations, and FAIR metadata checklists for manuscripts. Use when the user asks about Nature data availability, research data sharing, repository selection, accession numbers, restricted or sensitive data, source data, supplementary datasets, DataCite-style dataset references, FAIR metadata for academic publication, or Chinese-to-English data availability wording for Chinese-speaking authors pr...Votes: 0GitHub stars: 10
- Nature FigureCreate, revise, audit, and export submission-grade scientific figures for Nature-family and other high-impact venues in Python (matplotlib/seaborn) or R (ggplot2/patchwork/ComplexHeatmap), including multi-panel plots, figures4papers-style work, and journal-ready SVG/PDF/TIFF outputs. Use for paper or scientific plots, manuscript data visualization, 论文配图、学术写作配图、科研绘图、科研作图、画图、作图、出图、论文图表、可视化. Define the conclusion, evidence logic, data integrity, template compatibility, export needs, and reviewer...Votes: 0GitHub stars: 10
- Nature Image2pptConvert slide images, screenshots, scanned PDFs, and image-only PPT/PPTX files into high-fidelity object-level editable PowerPoint, including semantic-region mixed reconstruction, measured flowcharts and knowledge graphs, native circle nodes and connectors, single-object thin and filled arrows, speaker-note preservation, and rendered QA. Use for 图片转可编辑PPT、截图还原PPT、扫描PDF恢复、图片型PPTX转换、流程图/知识图谱/复合图形/箭头重建; not for authoring a new deck from notes.Votes: 0GitHub stars: 10
- Nature Paper To PatentConvert scientific papers, theses, technical reports, source code, figures, inventor notes, or research manuscripts into evidence-grounded Chinese invention patent drafts and attorney-facing technical disclosure materials. Use when an AI agent must mine patent points, draft or revise a Chinese technical disclosure (技术交底书), run prior-art comparison, convert Office project materials, map every claimed feature to source evidence, preserve core formulas as editable Office Math, generate claim-ali...Votes: 0GitHub stars: 10
- Nature Paper2pptBuild a complete Nature-style Chinese PPTX presentation from a scientific paper, preprint, PDF, article text, figure legends, or reading notes. Use for journal club, group meeting, thesis seminar, paper sharing, conference or defense decks, and Chinese requests such as 论文做PPT、论文汇报、组会PPT、文献汇报、学术汇报、做幻灯片、读书报告PPT. It classifies paper type, builds an evidence-led story, selects key figures, writes Chinese slide content and speaker notes, creates the actual .pptx, and runs corrective QA for complet...Votes: 0GitHub stars: 10
- Nature PolishingPolish, restructure, or translate academic prose into concise Nature-leaning English while preserving facts, evidence boundaries, terminology, and citation intent. Use for manuscript paragraphs, abstracts, introductions, Results, discussions, conclusions, titles, Methods, Chinese drafts, proofreading, language editing, and general academic or scientific writing. Also use to shorten bloated Results, allocate evidence across main text, captions, and Supplementary Information, prevent reviewer-d...Votes: 0GitHub stars: 10
- Nature Proposal WriterProposal-first scientific writing pipeline, installed under the compatibility trigger researchwrite and the repository package name nature-proposal-writer. Use for composing, revising, or auditing research proposals, opening reports, research plans, and evidence-grounded scientific writing. Three modes (compose/revise/hybrid) with a four-layer QA pipeline. Enforces evidence-before-prose, argument-before-sections, and contracts-before-paragraphs.Votes: 0GitHub stars: 10
- Nature ReaderBuild full-paper Chinese-English side-by-side, figure/table/equation-aware, source-grounded Markdown readers for journal or conference papers from PDF, DOI, arXiv, publisher HTML, or pasted text. Use whenever the user asks to translate or read a paper, make 中英文对照/原文对照/全文翻译解读, render equations instead of exposing raw LaTeX, extract figures or tables into the right positions, preserve figure/table placement near relevant prose, or keep exact source anchors for every block. This skill must not d...Votes: 0GitHub stars: 10
- Nature ResponseDraft, audit, or revise Nature-style revision correspondence packages: point-by-point reviewer-separated response letters, rebuttal letters, revision cover letters, LaTeX cover/response templates, and red-marked revised-manuscript excerpts. Keep mutually blind reviewers isolated so no reviewer-facing response reveals another reviewer's comments, numbering, recommendation, or author response. Prevent reviewer-driven manuscript accretion by preferring replacement, compression, or SI relocation ...Votes: 0GitHub stars: 10
- Nature ReviewerSimulate Nature-style or general pre-submission peer review from the referee perspective, not an author rebuttal. Use for reviewer reports, mock peer review, manuscript critique, novelty/significance/technical-soundness assessment, 审稿人视角评估, 模拟审稿, 预审, 投稿前自审, 审稿意见模拟, or 帮我审一下论文. Produce evidence-grounded Major Concerns, Minor Comments, and blocking flags. For multiple reviewers, keep every reviewer mutually blind in a separate context, freeze all reports before comparison, and create any synthe...Votes: 0GitHub stars: 10
- Nature WritingDraft, restructure, or plan Nature-style manuscript sections and initial-submission materials from author-provided claims, results, figures, notes, or Chinese drafts. Use for abstracts, introductions, related work, methods, Results or experiments, discussions, conclusions, titles, full manuscript arguments, and first-submission packages such as cover letters, title pages, highlights, author contributions, availability or declaration text, and reviewer suggestions. Also use to classify Results...Votes: 0GitHub stars: 10
- Bun File IoUse this when you are working on file operations like reading, writing, scanning, or deleting files. It summarizes the preferred file APIs and patterns used in this repo. It also notes when to use filesystem helpers for directories.Votes: 0GitHub stars: 10
- AnndataData structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.Votes: 0GitHub stars: 10
- Benchling IntegrationBenchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.Votes: 0GitHub stars: 10
- Bioimage AnalysisMicroscopy image analysis for cell biology. Cell segmentation (Cellpose, watershed), object tracking (trackpy), morphology quantification, colony counting, colocalization analysis, and cytoskeleton characterization. For pathology WSI use pathml; for flow cytometry use flow-cytometry-analysis.Votes: 0GitHub stars: 10
- BiopythonComprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.Votes: 0GitHub stars: 10
- BioservicesUnified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.Votes: 0GitHub stars: 10
- Cancer Genomics AnalysisComputational cancer genomics workflows. Somatic mutation detection and annotation, structural variation characterization, copy number analysis, tumor purity/ploidy estimation, NMF metagene extraction, and DNA damage response network analysis. For cancer mutation databases use cosmic-database; for variant clinical significance use clinvar-database.Votes: 0GitHub stars: 10
- Clinical Decision SupportGenerate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug dev...Votes: 0GitHub stars: 10
- Clinical ImagingClinical and physiological imaging analysis. Diffusion MRI ADC maps, micro-CT bone morphometry, hemodynamic parameter analysis, circadian rhythm cosinor analysis, ciliary beat frequency (FFT), and tissue deformation optical flow. For DICOM file handling use pydicom; for biosignals use neurokit2.Votes: 0GitHub stars: 10
- Clinical ReportsWrite comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation tools.Votes: 0GitHub stars: 10
- CobrapyConstraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.Votes: 0GitHub stars: 10
- Curated Bio DatasetsGuide to accessing curated biological datasets for computational biology. COSMIC cancer data, GTEx expression, GWAS catalog, GeneBass exome variants, BioGRID interactions, MSigDB gene sets, DisGeNET disease-gene associations, and GO ontology. For specific database APIs use individual database skills (cosmic-database, gwas-database, etc.).Votes: 0GitHub stars: 10
- DeeptoolsNGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.Votes: 0GitHub stars: 10
- Dnanexus IntegrationDNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.Votes: 0GitHub stars: 10
- EsmComprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein sequences, structures, or function prediction; designing novel proteins; generating protein embeddings; performing inverse folding; or conducting protein engineering tasks. Supports both local model usage and cloud-based Forge API for scalable infer...Votes: 0GitHub stars: 10
- EtetoolkitPhylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.Votes: 0GitHub stars: 10
- Flow Cytometry AnalysisComplete flow cytometry analysis pipeline. FCS file handling, compensation, manual/automated gating, immunophenotyping, CFSE proliferation analysis, cell cycle analysis (Dean-Jett-Fox), and apoptosis assays. Extends flowio with analytical workflows. For raw FCS parsing only use flowio.Votes: 0GitHub stars: 10
- FlowioParse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.Votes: 0GitHub stars: 10
- GgetFast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis. Best for interactive exploration, simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices.Votes: 0GitHub stars: 10
- GlycobiologyGlycosylation site prediction and glycobiology analysis. N-glycosylation motif finding, O-glycosylation hotspot prediction, glycan structure resources. Lightweight, pure Python. For protein function queries use uniprot-database; for structure analysis use alphafold-database.Votes: 0GitHub stars: 10
- HistolabLightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, stain normalization for H&E images. Best for simple pipelines, dataset preparation, quick tile-based analysis. For advanced spatial proteomics, multiplexed imaging, or deep learning pipelines use pathml.Votes: 0GitHub stars: 10
- Immunology AssaysComputational analysis of immunology experimental data. ATAC-seq differential accessibility, immune cell tracking from microscopy, ELISA data processing with 4-parameter logistic fitting, immunohistochemistry quantification, antibody titer analysis, and cell cycle phase duration estimation. For flow cytometry use flow-cytometry-analysis; for scRNA-seq use scanpy.Votes: 0GitHub stars: 10
- LamindbThis skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility in biological research. Covers data management, annotation, ontologies (genes, cell types, disea...Votes: 0GitHub stars: 10
- Latchbio IntegrationLatch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.Votes: 0GitHub stars: 10
- Microbial DynamicsMicrobial population dynamics modeling and analysis. Bacterial growth curve fitting (logistic, Gompertz, Baranyi), Lotka-Volterra community dynamics, Gillespie stochastic simulation, biofilm quantification, CFU enumeration, and genome annotation. For metabolic modeling use cobrapy; for sequence analysis use biopython.Votes: 0GitHub stars: 10