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Claude Skills by BioTender-max
github.com/BioTender-max897 skills8 installs817 views
- Soul2dnaCompile SOUL.md character profiles into synthetic diploid genomes (.genome.json) via trait-to-allele mappingVotes: 0GitHub stars: 171
- Struct PredictorProtein structure prediction with Boltz-2. Accepts YAML inputs (single protein or multi-chain complex), runsVotes: 0GitHub stars: 171
- Target Validation ScorerEvidence-grounded target validation scoring with GO/NO-GO decisions for drug discovery campaignsVotes: 0GitHub stars: 171
- Turingdb GraphBuild, query, and analyse biomedical knowledge graphs in TuringDB, a columnar graph database with git-like versioning.Votes: 0GitHub stars: 171
- Ukb NavigatorSemantic search across UK Biobank's 12,000+ data fields and publications — find the right variables for yourVotes: 0GitHub stars: 171
- Variant AnnotationAnnotate VCF variants with Ensembl VEP REST, ClinVar significance, gnomAD/population frequency context, and prioritizedVotes: 0GitHub stars: 171
- Vcf AnnotatorAnnotate VCF variants with Ensembl VEP, ClinVar, and gnomAD. Ranks variants by impact (HIGH/MODERATE/LOW/MODIFIER) and generates a reproducible report.Votes: 0GitHub stars: 171
- Wes Clinical Report EnGenerates professional clinical PDF reports in English from WES (Whole Exome Sequencing) data with clinical interpretationVotes: 0GitHub stars: 171
- Wes Clinical Report EsGenerates professional clinical PDF reports in Spanish from WES (Whole Exome Sequencing) data with clinical interpretation,Votes: 0GitHub stars: 171
- Ade Corpus**ADE Corpus V2** — Adverse Drug Event relation extraction dataset from annotated PubMed case reports.Votes: 0GitHub stars: 171
- AdrecsQuery the ADReCS (Adverse Drug Reaction Classification System) v3.3 database. Use whenever the user asks about adverse drug reactions, drug safety profiles, ADR classification, ADR severity/frequency, or wants to look up any entity (drug name, BADD Drug ID, DrugBank ID, ATC code, CAS RN, PubChem CID, KEGG ID, ADR term, ADReCS ID, MedDRA code, MeSH ID) in ADReCS.Votes: 0GitHub stars: 171
- AtcQuery the WHO ATC/DDD Classification System. Use whenever the user asks about ATC codes, drug classification hierarchy, Defined Daily Doses (DDD), or wants to look up drugs by ATC class or find the ATC code for a drug name.Votes: 0GitHub stars: 171
- BindingdbQuery the BindingDB drug-target binding affinity database. Use whenever the user asks about protein-ligand binding data, affinity measurements (Ki, IC50, Kd, EC50), or wants to look up binding partners for a UniProt ID, PDB ID, or compound SMILES string.Votes: 0GitHub stars: 171
- CadecQuery the CADEC (CSIRO Adverse Drug Event Corpus). Use whenever the user asks about adverse drug event mentions in consumer health text, entity annotations from patient forum posts, MedDRA/SNOMED-CT normalised ADR spans, or wants to look up drugs, symptoms, or coded entities in the CADEC corpus.Votes: 0GitHub stars: 171
- ChebiQuery the ChEBI (Chemical Entities of Biological Interest) database. Use whenever the user asks about small molecule identifiers, chemical ontology roles, molecular formulae, SMILES, InChI, synonyms, or cross-references for biologically relevant chemical compounds via ChEBI.Votes: 0GitHub stars: 171
- ChemblQuery the ChEMBL database for drug molecules, bioactivity data, and drug targets via the ChEMBL REST API. Use whenever the user asks about drug properties (molecular weight, logP, Lipinski violations), drug-target interactions, bioactivity assay results, or wants to look up any entity by ChEMBL ID or drug/gene name in ChEMBL. Supports single entity or batch queries. No API key required.Votes: 0GitHub stars: 171
- Cpic> Clinical Pharmacogenomics Implementation Consortium — gene-based prescribing guidelines > **Category:** Drug-centric | **Type:** DB | **Subcategory:** Drug Knowledgebase > **API:** `https://api.cpicpgx.org/v1` (PostgREST, free, no key required) | Resource | URL | |----------|-----| | Homepage | https://cpicpgx.org/ | | API / Data | https://cpicpgx.org/cpic-data/ | | Paper | https://pubmed.ncbi.nlm.nih.gov/33479744/ | ---Votes: 0GitHub stars: 171
- DailymedQuery DailyMed for FDA drug label / package insert information. Use whenever the user asks about drug labeling, SPL documents, prescribing information, NDC codes, or needs to look up current FDA-approved drug details by name or NDC. Supports single entity or batch queries.Votes: 0GitHub stars: 171
- Ddi Corpus| Field | Value | |-------|-------| | **Resource** | DDI Corpus 2013 | | **Category** | Drug-centric / Drug NLP & Text Mining | | **Source** | [GitHub](https://github.com/isegura/DDICorpus) | | **Paper** | [Herrero-Zazo et al., 2013](https://www.sciencedirect.com/science/article/pii/S1532046413001123) | | **Corpus Size** | ~2,740 unique entities, ~5,000 annotated DDI pairs | | **Sources** | DrugBank descriptions + MEDLINE abstracts |Votes: 0GitHub stars: 171
- DdinterQuery the DDInter drug-drug interaction database. Use whenever the user asks about drug-drug interactions, DDI severity levels, or wants to look up interactions for a drug name or DDInter ID.Votes: 0GitHub stars: 171
- DgidbQuery the DGIdb (Drug-Gene Interaction Database) for drug-gene interactions, gene druggability categories, and drug target information. Use whenever the user asks about drug targets, druggable genes, gene-drug interactions, or wants to look up any entity (gene name, drug name, druggability category) in DGIdb.Votes: 0GitHub stars: 171
- Dili`DILISkill` uses live ChEMBL REST endpoints for hepatotoxicity-related evidence.Votes: 0GitHub stars: 171
- DilirankQuery the DILIrank/FDA Liver Toxicity Knowledge Base (LTKB). Use whenever the user asks about drug-induced liver injury (DILI) risk, hepatotoxicity classification, or wants to look up any drug (by name, LTKB ID, or DILIst ID) in the DILIrank or DILIst datasets.Votes: 0GitHub stars: 171
- DrkgQuery the DRKG (Drug Repurposing Knowledge Graph). Use whenever the user asks about drug–gene, drug–disease, gene–disease, or other biomedical entity relationships in a knowledge-graph context, drug repurposing candidates, COVID-19 drug repurposing, or wants to explore neighbours of any biomedical entity (compound, gene, disease, pathway, side effect, etc.) in DRKG.Votes: 0GitHub stars: 171
- DrugbankQuery a locally downloaded DrugBank database. Use whenever the user asks about drug information, drug targets, drug-drug interactions, drug categories, or wants to look up any entity (DrugBank ID, drug name, CAS number, synonym) in DrugBank.Votes: 0GitHub stars: 171
- DrugcentralQuery the DrugCentral drug pharmacology database. Use whenever the user asks about approved drug structures, drug targets, pharmacological actions, or wants to look up any entity (drug name, DrugCentral ID, CAS number, InChIKey) in DrugCentral.Votes: 0GitHub stars: 171
- DrugcombQuery the DrugComb drug combination database for cancer cell-line synergy and sensitivity data. Use whenever the user asks about drug combinations, synergy scores (ZIP/Bliss/Loewe/HSA), combination sensitivity (CSS), or wants to look up how two drugs interact in a specific cancer cell line.Votes: 0GitHub stars: 171
- DrugcombdbQuery canonical DrugCombDB combination records. Use when the user asks about drug pairs, synergy values, or cell-line-specific combination evidence.Votes: 0GitHub stars: 171
- DrugmechdbQuery the DrugMechDB drug mechanism-of-action database. Use whenever the user asks about drug mechanisms, drug-to-disease paths, biological targets of a drug, or wants to look up any biomedical entity (drug name, protein, disease, DrugBank ID, MESH ID, UniProt ID, GO term, etc.) in DrugMechDB.Votes: 0GitHub stars: 171
- DrugprotQuery drug/chemical and gene/protein entities in the **BioCreative VII DrugProt** dataset. Returns annotated relations (e.g., INHIBITOR, ACTIVATOR, SUBSTRATE) between chemicals and genes/proteins from biomedical literature.Votes: 0GitHub stars: 171
- DrugrepobankQuery the DrugRepoBank drug repurposing evidence database. Use whenever the user asks about repurposing candidates, drug–disease–target repurposing evidence, or wants to look up any entity (drug name, DrugBank ID, ChEMBL ID, PubChem CID, TTD target ID, UniProt ID, disease name) in DrugRepoBank.Votes: 0GitHub stars: 171
- Drugs Com ReviewsQuery the DrugLib.com Drug Review Dataset (UCI #461). Use whenever the user asks about patient drug reviews, drug effectiveness ratings, side-effect profiles, or condition-specific treatment experiences from DrugLib.com.Votes: 0GitHub stars: 171
- FaersQuery the FDA Adverse Event Reporting System (FAERS) via openFDA API. Use whenever the user asks about adverse drug reactions, side effects, drug safety signals, or wants to look up reported adverse events for one or more drug names.Votes: 0GitHub stars: 171
- Fda Orange BookQuery or inspect the FDA Orange Book - FDA-Approved Drug Products Listing resource for drug-centric tasks with emphasis on drug knowledgebase Use whenever Codex needs the calling pattern, downloadable entrypoint, or example query flow from this skill example script.Votes: 0GitHub stars: 171
- GdkdQuery the Gene-Drug Knowledge Database (GDKD) for variant-specific gene–drug associations in oncology. Use when the user asks about cancer genomic biomarkers, drug sensitivity/resistance by gene or variant, targetable mutations, or clinical evidence for cancer therapeutics.Votes: 0GitHub stars: 171
- Gdsc| Field | Value | |---|---| | Category | Drug-centric | | Subcategory | Drug Molecular Property | | Source | Sanger / Wellcome Trust | | Datasets | **screened_compounds** (drug list), **GDSC1/GDSC2** (dose-response), **Cell Model Passports** (cell-line annotations) | | URL | <https://www.cancerrxgene.org/> | | Cell Models | <https://cellmodelpassports.sanger.ac.uk/downloads> |Votes: 0GitHub stars: 171
- IupharQuery the IUPHAR/BPS Guide to Pharmacology REST API for drug targets, ligands (drugs/compounds), and their interactions. Use whenever the user asks about pharmacological targets, receptor–ligand relationships, drug mechanisms of action, or wants to look up any drug or target name in IUPHAR. Supports single entity or batch queries. No API key required.Votes: 0GitHub stars: 171
- Kegg Drug> Approved drugs — structures, targets, pathways & drug-drug interactions > **Category:** Drug-centric | **Type:** DB | **Subcategory:** DDI > **API:** `https://rest.kegg.jp` (free, no key required for academic use) | Resource | URL | |----------|-----| | Homepage | https://www.genome.jp/kegg/ | | API docs | https://www.kegg.jp/kegg/docs/keggapi.html | | Paper | https://academic.oup.com/nar/article/38/suppl_1/D355/3112250 | ---Votes: 0GitHub stars: 171
- LivertoxLookup LiverTox drug entries using the canonical packaged fixture file.Votes: 0GitHub stars: 171
- MecddiQuery the MecDDI mechanism-based drug-drug interaction database. Use whenever the user asks about drug-drug interactions, DDI mechanisms (PK/PD), enzyme or transporter-mediated interactions, or wants to look up interacting drug pairs by drug name or MecDDI drug ID. Trigger on keywords like DDI, drug interaction, MecDDI, mechanism-based interaction, pharmacokinetic interaction, pharmacodynamic interaction, or any query involving two drugs that may interact.Votes: 0GitHub stars: 171
- MedlineplusQuery MedlinePlus for consumer-oriented drug and health-topic information. Accepts drug names, RxCUI codes, NDC codes, or ICD-10-CM diagnosis codes. Uses two free, keyless NLM APIs: the Web Service (keyword search) and MedlinePlus Connect (code-based lookup).Votes: 0GitHub stars: 171
- Molecular TargetsQuery the NCI CCDI Molecular Targets Platform (pediatric oncology) for targets (genes), diseases, drugs, and target-disease associations via its public GraphQL API. Auto-detects entity type from input string.Votes: 0GitHub stars: 171
- Molecular Targets DataQuery the NCI-60 Molecular Target (Protein) database from the Developmental Therapeutics Program. Use when the user asks about protein expression of drug targets across the NCI-60 cancer cell line panel, or wants to look up a gene, cell line, or cancer panel in the NCI DTP molecular target dataset.Votes: 0GitHub stars: 171
- NdfrtQuery NDF-RT (National Drug File Reference Terminology) via the NCI EVS REST API. Use when looking up drug mechanisms of action, physiological effects, pharmacologic classes, chemical structures, or drug–disease relationships (may_treat / may_prevent) in NDF-RT. Accepts drug names or NDF-RT codes.Votes: 0GitHub stars: 171
- NsidesQuery the nSIDES drug side effect databases (OnSIDES, OffSIDES, KidSIDES). Use whenever the user asks about drug adverse reactions, side effects, off-label safety signals, or pediatric drug safety for a given drug name.Votes: 0GitHub stars: 171
- Open TargetsQuery the Open Targets Platform for drug-target-disease associations. Use whenever the user asks about drug targets, gene-disease associations, drug indications, clinical trial phases, or wants to look up any entity (Ensembl gene ID, ChEMBL drug ID, or free-text gene/drug name) in Open Targets. Also trigger when the user mentions Open Targets, ENSG IDs, CHEMBL IDs, or asks about target prioritization for diseases.Votes: 0GitHub stars: 171
- OpenfdaQuery FDA drug labeling data via openFDA. Use whenever the user asks about drug prescribing information — indications, warnings, dosage, adverse reactions, contraindications, or administration routes. Supports single or batch lookup by brand/generic name or by indication/condition.Votes: 0GitHub stars: 171
- OreganoQuery the OREGANO knowledge graph for computational drug repurposing. Use whenever the user asks about drug–target–disease–gene–pathway relationships, compound cross-references, drug repurposing hypotheses, or wants to explore neighbors of any biomedical entity in a knowledge graph that includes natural compounds.Votes: 0GitHub stars: 171
- PharmgkbQuery ClinPGx (PharmGKB) and CPIC for pharmacogenomics data. Use whenever the user asks about gene-drug interactions, pharmacogenomics clinical annotations, drug-metabolizing enzymes, CPIC guidelines, or variant-level PGx evidence for any gene symbol, drug name, rsID, or ClinPGx accession.Votes: 0GitHub stars: 171
- PharmkgQuery the PharmKG knowledge graph (180k entities, 39 relation types, >1M triples). Use whenever the user asks about biomedical relationships among genes, drugs/chemicals, and diseases — e.g. drug–gene interactions, drug–disease associations, gene–disease links, or drug–drug relationships derived from literature and curated databases.Votes: 0GitHub stars: 171