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Claude Skills by BioTender-max
github.com/BioTender-max897 skills8 installs817 views
- Bio OrchestratorMeta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysisVotes: 0GitHub stars: 171
- Bioconductor BridgeBioconductor package discovery, workflow recommendation, setup inspection, and starter code generation groundedVotes: 0GitHub stars: 171
- Cell DetectionCell segmentation in fluorescence microscopy images. Supports Cellpose/cpsam (Cellpose 4.0) with additional backendsVotes: 0GitHub stars: 171
- Claw Ancestry PcaAncestry decomposition PCA against the Simons Genome Diversity ProjectVotes: 0GitHub stars: 171
- Claw MetagenomicsShotgun metagenomics profiling — taxonomy, resistome, and functional pathwaysVotes: 0GitHub stars: 171
- Claw Methylation CycleMethylation cycle analysis skill for ClawBio. Produces enzymatic activity profiles, Net Methylation Capacity (NMC), BH4 axis estimates, compound heterozygosity detection, and clinician-review genotype findings from raw SNP genotype data. ---Votes: 0GitHub stars: 171
- Claw Semantic SimSemantic Similarity Index for disease research literature using PubMedBERT embeddingsVotes: 0GitHub stars: 171
- Clinical Trial FinderFind clinical trials for a gene, variant, or condition from ClinicalTrials.gov + EUCTR, with FHIR R4 outputVotes: 0GitHub stars: 171
- Clinical Variant ReporterClassify germline variants from VCF/BCF files according to the ACMG/AMP 2015 28-criteria evidence framework andVotes: 0GitHub stars: 171
- ClinpgxQuery the ClinPGx API for pharmacogenomic gene-drug data, clinical annotations, CPIC guidelines, and FDA drugVotes: 0GitHub stars: 171
- Crispr Screen TriageDeterministic CRISPR screen hit ranking from local guide-level count tablesVotes: 0GitHub stars: 171
- De SummarySummarise pre-computed differential expression results with ranked gene lists, biological themes, and publication-readyVotes: 0GitHub stars: 171
- Diff VisualizerRich downstream visualisation and reporting for bulk RNA-seq differential expression and scRNA marker/contrastVotes: 0GitHub stars: 171
- DnaspFull reimplementation of DnaSP 6 for population genetics analysis of aligned DNA sequences. Covers nucleotide diversity, haplotype statistics, neutrality tests (Tajima's D, Fu & Li's D*/F*, R2), linkage disequilibrium (D, D', R², ZnS, Za, ZZ), minimum recombination (Rm), mismatch distribution, InDel polymorphism, between-population divergence (Dxy, Da, fixed/shared sites), outgroup-based Fu & Li D/F tests (fuliout), the HKA multi-locus neutrality test (hka), the McDonald-Kreitman test (mk), K...Votes: 0GitHub stars: 171
- Drug PhotoMedication photo to personalised PGx dosage card via Claude vision — snap a pill, get genotype-informed guidanceVotes: 0GitHub stars: 171
- Eqtl Catalogue Region FetchFetch a region of cis-eQTL summary statistics from EBI eQTL Catalogue v7+ via tabix-on-FTP. Use when an agent needs eQTL beta / SE / p-value for every variant in a window around a gene's TSS for one specific dataset (study × tissue × quantification method). Input: dataset_id, chromosome, start, end, optional molecular_trait_id. Output: harmonised TSV slice.Votes: 0GitHub stars: 171
- Equity ScorerCompute HEIM diversity and equity metrics from VCF or ancestry data. Generates heterozygosity, FST, PCA plots,Votes: 0GitHub stars: 171
- FastreerPhylogenetic distance matrices and trees from VCF or FASTA data using the fastreeR hybrid Java/Python toolkit (VCF2TREE, VCF2DIST, DIST2TREE, FASTA2DIST).Votes: 0GitHub stars: 171
- Fine MappingStatistical fine-mapping of GWAS loci using SuSiE, SuSiE-inf, and Approximate Bayes Factors to identify credibleVotes: 0GitHub stars: 171
- Flow BioFlow.bio API bridge — authenticate, browse pipelines/samples/projects, search, upload data, launch pipeline executions,Votes: 0GitHub stars: 171
- Galaxy BridgeGalaxy tool discovery, intelligent recommendation, and execution — 8,000+ bioinformatics tools from usegalaxy.orgVotes: 0GitHub stars: 171
- Genome CompareCompare your genome to George Church (PGP-1) and estimate ancestry composition via IBS and EM admixtureVotes: 0GitHub stars: 171
- Genome MatchScore genetic compatibility across all male-female pairings in a Genomebook generationVotes: 0GitHub stars: 171
- Gwas Catalog Region FetchFetch a region of GWAS summary statistics from the NHGRI-EBI GWAS Catalog harmonised collection via tabix-on-FTP. Use when an agent needs GWAS beta / SE / p-value for every variant in a window for one specific study (GCST accession). Input: accession, chromosome, start, end. Output: harmonised TSV slice in canonical format.Votes: 0GitHub stars: 171
- Gwas LookupFederated variant lookup across 9 genomic databases — GWAS Catalog, Open Targets, PheWeb (UKB, FinnGen, BBJ),Votes: 0GitHub stars: 171
- Gwas PipelineEnd-to-end GWAS automation wrapping PLINK2 for genotype QC and REGENIE for two-step whole-genome regression associationVotes: 0GitHub stars: 171
- Gwas PrsCalculate polygenic risk scores from DTC genetic data using the PGS CatalogVotes: 0GitHub stars: 171
- Illumina BridgeImport DRAGEN-exported Illumina result bundles into ClawBio for local tertiary analysis and downstream routing.Votes: 0GitHub stars: 171
- Lit Synthesizer'Search PubMed and bioRxiv for bioinformatics literature, synthesise results into a structured report, and buildVotes: 0GitHub stars: 171
- Mendelian RandomisationTwo-sample Mendelian Randomisation from GWAS summary statistics with IVW, MR-Egger, weighted median/mode, andVotes: 0GitHub stars: 171
- Methylation ClockCompute epigenetic age from DNA methylation arrays using PyAging clocks from GEO accessions or local files.Votes: 0GitHub stars: 171
- Multiqc ReporterAggregates QC reports from any bioinformatics tool outputs (FastQC, fastp, STAR, Picard, samtools, etc.) intoVotes: 0GitHub stars: 171
- Ncbi DatasetsDownload genomes, genes, virus sequences, and taxonomy data from NCBI using the datasets and dataformat CLI tools.Votes: 0GitHub stars: 171
- Nfcore Rnaseq WrapperWrapper skill for running nf-core/rnaseq bulk RNA-seq preprocessing from FASTQ or BAM inputs with strict preflight, reproducibility outputs, and downstream handoff to ClawBio bulk RNA-seq DE skills.Votes: 0GitHub stars: 171
- Nfcore Scrnaseq WrapperWrapper skill for running nf-core/scrnaseq upstream single-cell RNA-seq preprocessing from FASTQ with strict preflight, reproducibility outputs, and downstream handoff to ClawBio scRNA skills.Votes: 0GitHub stars: 171
- Nutrigx AdvisorPersonalised nutrition report from consumer genetic data (23andMe, AncestryDNA, VCF) — interrogates nutritionally-relevantVotes: 0GitHub stars: 171
- Omics Target Evidence MapperAggregate public target-level evidence across omics and translational sources for research triage.Votes: 0GitHub stars: 171
- Pharmgx ReporterPharmacogenomic report from DTC genetic data (23andMe/AncestryDNA) — 12 genes, 31 SNPs, 51 drugsVotes: 0GitHub stars: 171
- Profile ReportUnified personal genomic profile report — reads a PatientProfile JSON and synthesizes all skill results intoVotes: 0GitHub stars: 171
- Proteomics ClockCompute organ-specific biological age from Olink proteomic data using Goeminne et al. (2025) elastic net agingVotes: 0GitHub stars: 171
- Proteomics DeDifferential expression analysis for label-free quantitative (LFQ) intensity data with standard MaxQuant andVotes: 0GitHub stars: 171
- Pubmed SummariserSearch PubMed for a gene name or disease term and generate a structured research briefing of the top recent English-languageVotes: 0GitHub stars: 171
- Rare Disease RnaseqBlood RNA-seq expression-outlier detection for rare-disease diagnostics. Cases scored against a control reference panel; outliers ranked and filtered by a haploinsufficient disease-gene panel.Votes: 0GitHub stars: 171
- RecombinatorProduce offspring genomes from parent pairs via meiotic recombination, mutation, and clinical evaluationVotes: 0GitHub stars: 171
- Repro EnforcerExport any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition,Votes: 0GitHub stars: 171
- Rnaseq DeDifferential expression analysis for bulk RNA-seq and pseudo-bulk count matrices with QC, PCA, and contrast testing.Votes: 0GitHub stars: 171
- Scrna EmbeddingLocal scVI/scANVI-based single-cell latent embedding and batch-aware integration from raw-count .h5ad or 10xVotes: 0GitHub stars: 171
- Scrna OrchestratorLocal Scanpy pipeline for single-cell RNA-seq QC, optional doublet detection, clustering, marker discovery, optionalVotes: 0GitHub stars: 171
- Seq WranglerNGS read QC, alignment, and BAM processing pipeline. Wraps FastQC, BWA/Bowtie2/Minimap2, SAMtools, and MultiQC for automated read-to-BAM workflows.Votes: 0GitHub stars: 171
- Skill BuilderScaffold a new ClawBio skill from a spec file (JSON/YAML) or interactively — generates SKILL.md, Python skeleton, tests, and updates catalog.jsonVotes: 0GitHub stars: 171