Summarize

---
name: summarize
description: Summarize a research source, paper, report, repository README, local artifact, or PDF using the RLM pattern — source stored on disk, never injected raw into context. Use when the user asks to summarize a paper, URL, PDF, repo, or long document.
argument-hint: <source> [--window-size <chars>] [--overlap <chars>] [--tier1-threshold <chars>] [--tier2-threshold <chars>]
---

# Summarize (RLM)

Summarize the research source the user names.

Derive a short slug from the source filename or URL domain (lowercase, hyphens, no filler words, ≤5 words — e.g. `attention-is-all-you-need`). Use this slug for all files in this run.

## Why this uses the RLM pattern

Standard summarization injects the full document into context. Above ~15k tokens, early content degrades as the window fills (context rot). This workflow keeps the document on disk as an external variable and reads only bounded windows — so context pressure is proportional to the window size, not the document size.

Tier 1 (below the Tier-1 threshold) is a deliberate exception: direct injection is safe for short inputs and windowed reading would add unnecessary friction.

## Runtime knobs (context-window controls)

Support both inline flags and environment variables so users can tune context-window behavior per run or globally.

- `--window-size <chars>` or `SUMMARIZE_WINDOW_CHARS` (default: `6000`)
- `--overlap <chars>` or `SUMMARIZE_OVERLAP_CHARS` (default: `500`)
- `--tier1-threshold <chars>` or `SUMMARIZE_TIER1_THRESHOLD` (default: `8000`)
- `--tier2-threshold <chars>` or `SUMMARIZE_TIER2_THRESHOLD` (default: `60000`)

Rules:
- Inline flags override environment variables.
- Validate `window-size > overlap` and `tier1-threshold < tier2-threshold`; if invalid, stop and report a clear configuration error.
- Log resolved values once per run: `[summarize] config window=<w> overlap=<o> tier1=<t1> tier2=<t2>`.

---

## Step 1 — Fetch, validate, measure

Run all guards before any tier logic. A failure here is cheap; a failure mid-Tier-3 is not.

- **GitHub repo URL** (`https://github.com/owner/repo` — exactly 4 slashes): fetch the raw README instead. Try `https://raw.githubusercontent.com/{owner}/{repo}/main/README.md`, then `/master/README.md`. A repo HTML page is not the document the user wants to summarize.
- **Remote URL**: fetch to disk with `curl -sL -o outputs/.notes/<slug>-raw.txt <url>` via Bash. Do NOT use WebFetch — its return value enters context directly, bypassing the RLM external-variable principle.
- **Local file or PDF**: copy or extract to `outputs/.notes/<slug>-raw.txt`. For PDFs, extract text via `pdftotext` or equivalent before measuring.
- **Empty or failed fetch**: if the file is < 50 bytes after fetching, stop and surface the error to the user — do not proceed to tier selection.
- **Binary content**: if the file is > 1 KB but contains < 100 readable text characters, stop and tell the user the content appears binary or unextracted.
- **Existing output**: if `outputs/<slug>-summary.md` already exists, ask the user whether to overwrite or use a different slug. Do not proceed until confirmed.

Measure decoded text characters (not bytes — UTF-8 multi-byte chars would overcount). Log: `[summarize] source=<source> slug=<slug> chars=<count>`

---

## Step 2 — Choose tier

| Chars | Tier | Strategy |
|---|---|---|
| < `<tier1-threshold>` | 1 | Direct read — full content enters context (safe for short inputs) |
| `<tier1-threshold>` – `<tier2-threshold>` | 2 | RLM-lite — windowed bash extraction, progressive notes to disk |
| > `<tier2-threshold>` | 3 | Full RLM — bash chunking + parallel researcher subagents |

Log: `[summarize] tier=<N> chars=<count>`

---

## Tier 1 — Direct read

Read `outputs/.notes/<slug>-raw.txt` in full. Summarize directly using the output format. Write to `outputs/<slug>-summary.md`.

---

## Tier 2 — RLM-lite windowed read

The document stays on disk. Extract `<window-size>`-char windows via Bash:

```python
# WHY f.seek/f.read: the Read tool uses line offsets, not char offsets.
# For exact char-boundary windowing across arbitrary text, bash is required.
with open("outputs/.notes/<slug>-raw.txt", encoding="utf-8") as f:
    f.seek(n * <window-size>)
    window = f.read(<window-size>)
```

For each window:
1. Extract key claims and evidence.
2. Append to `outputs/.notes/<slug>-notes.md` before reading the next window. This is the checkpoint: if the session is interrupted, processed windows survive.
3. Log: `[summarize] window <N>/<total> done`

Synthesize `outputs/.notes/<slug>-notes.md` into `outputs/<slug>-summary.md`.

---

## Tier 3 — Full RLM parallel chunks

Each chunk gets a fresh researcher subagent context window — context rot is impossible because no subagent sees more than `<window-size>` chars.

WHY overlap matters: academic papers contain multi-sentence arguments that span chunk boundaries. The configured overlap ensures a cross-boundary claim appears fully in at least one adjacent chunk.

### 3a. Chunk the document

```python
import os
os.makedirs("outputs/.notes", exist_ok=True)

with open("outputs/.notes/<slug>-raw.txt", encoding="utf-8") as f:
    text = f.read()

chunk_size, overlap = <window-size>, <overlap>
chunks, i = [], 0
while i < len(text):
    chunks.append(text[i : i + chunk_size])
    i += chunk_size - overlap

for n, chunk in enumerate(chunks):
    # Zero-pad index so files sort correctly (chunk-002 before chunk-010)
    with open(f"outputs/.notes/<slug>-chunk-{n:03d}.txt", "w", encoding="utf-8") as f:
        f.write(chunk)

print(f"[summarize] chunks={len(chunks)} chunk_size={chunk_size} overlap={overlap}")
```

### 3b. Confirm before spawning

Briefly summarize: "Source is ~<chars> chars -> <N> chunks -> <N> researcher subagents. Continuing with the chunked pass." Then continue automatically. Do not ask for confirmation or wait for a proceed response unless the user explicitly requested review before launching.

### 3c. Dispatch researcher subagents

Spawn one `Agent` call per chunk, all in a single message so they run in parallel (cap concurrency sensibly, e.g. 4-6 at a time for very large documents):

`Agent(subagent_type="researcher", prompt="Read ONLY outputs/.notes/<slug>-chunk-NNN.txt. Extract: (1) key claims, (2) methodology or technical approach, (3) cited evidence. Do NOT use web search or fetch external URLs — this is single-source summarization. If a claim appears to start or end mid-sentence at the file boundary, mark it BOUNDARY PARTIAL. Write to outputs/.notes/<slug>-summary-chunk-NNN.md.")`

### 3d. Aggregate

After all subagents return, verify every expected `outputs/.notes/<slug>-summary-chunk-NNN.md` exists. Note any missing chunk indices — they will appear in the Coverage gaps section of the output. Do not abort on partial coverage; a partial summary with gaps noted is more useful than no summary.

When synthesizing:
- **Deduplicate**: a claim in multiple chunks is one claim — keep the most complete formulation.
- **Resolve boundary conflicts**: for adjacent-chunk contradictions, prefer the version with more supporting context.
- **Remove BOUNDARY PARTIAL markers** where a complete version exists in a neighbouring chunk.

Write to `outputs/<slug>-summary.md`.

---

## Output format

All tiers produce the same artifact at `outputs/<slug>-summary.md`:

```markdown
# Summary: [document title or source filename]

**Source:** [URL or file path]
**Date:** [YYYY-MM-DD]
**Tier:** [1 / 2 (N windows) / 3 (N chunks)]

## Key Claims
[3-7 most important assertions, each as a bullet]

## Field Context
[Where the source positions itself, which prior work or research line it claims to extend, and what remains source-inferred rather than externally checked. Do not invent author/lab background; use the literature-review skill for a corpus-level view.]

## Technical Hinges
[2-4 contributions or decisions that the source turns on, ranked by originality and importance. For each hinge, name the contrast with prior work when the source gives enough evidence.]

## Methodology From Primitives
[Approach, dataset, evidence type, evaluation, baselines, and failure modes explained from first principles. Omit only when the source has no methodology or evidence section.]

## Limitations
[What the source explicitly flags as weak, incomplete, or out of scope]

## Follow-up Questions
[3 questions that would change the next research decision, grounded in the source's discussion, limitations, results, or open problems]

## Verdict
[One paragraph: what this document establishes, its credibility, who should read it]

## Sources
1. [Title or filename] — [URL or file path]

## Coverage gaps *(Tier 3 only — omit if all chunks succeeded)*
[Missing chunk indices and their approximate byte ranges]
```

Before you stop, verify on disk that `outputs/<slug>-summary.md` exists.

Sources contains only the single source confirmed reachable in Step 1. No verifier subagent is needed — there are no URLs constructed from memory to verify.