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Genomics Variants

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> [!info] What it does > Map GWAS loci to ranked candidate genes using a deterministic multi-skill chain (EFO -> GWAS -> coordinates -> Open Targets L2G/coloc -> eQTL -> burden/coding context), with reproducible tables and optional figures. Use when a user provides a trait/EFO term and/or lead variants and needs locus-to-gene prioritization for downstream biology decisions. **Source:** [skills/locus-to-gene-mapper-skill/SKILL.md](../../../skills/locus-to-gene-mapper-skill/SKILL.md) · **Doma...

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  • Added September 12, 2026
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npx -y skills add stanfish06/skillquarium --skill genomics-variants --agent claude-code

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SKILL.md
---
title: locus-to-gene-mapper-skill
aliases:
  - locus to gene mapper skill
tags:
  - skill
  - domain/genomics-variants
domain: genomics-variants
status: untried
source: skills/locus-to-gene-mapper-skill/SKILL.md
created: 2026-08-07
---

# locus-to-gene-mapper-skill

> [!info] What it does
> Map GWAS loci to ranked candidate genes using a deterministic multi-skill chain (EFO -> GWAS -> coordinates -> Open Targets L2G/coloc -> eQTL -> burden/coding context), with reproducible tables and optional figures. Use when a user provides a trait/EFO term and/or lead variants and needs locus-to-gene prioritization for downstream biology decisions.

**Source:** [skills/locus-to-gene-mapper-skill/SKILL.md](../../../skills/locus-to-gene-mapper-skill/SKILL.md)  ·  **Domain:** [Genomics, Variants & Population Genetics](../../maps/genomics-variants.md)  ·  **Table:** [skills.base](../../skills.base)  ·  **Index:** [Skills Index](../../index.md)

## Related skills

_None auto-detected. Add your own links here, e.g. `[[scanpy]]`._

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## Notes

Files in this skill

  • alphagenome-single-variant-analysis.md1.4 KB
  • archaic-introgression.md814 B
  • biobankjapan-phewas-skill.md978 B
  • civic-skill.md841 B
  • claw-ancestry-pca.md779 B
  • clinical-variant-reporter.md1001 B
  • clinvar-variation-skill.md926 B
  • dnasp.md1.4 KB
  • eqtl-catalogue-region-fetch.md1.1 KB
  • eqtl-catalogue-skill.md892 B
  • equity-scorer.md852 B
  • fastreer.md787 B
  • fine-mapping.md979 B
  • finngen-phewas-skill.md946 B
  • genebass-gene-burden-skill.md907 B
  • geniml.md1.1 KB
  • genome-compare.md804 B
  • genome-match.md765 B
  • genomics-workflow-acceleration.md1.4 KB
  • gnomad-graphql-skill.md873 B

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stanfish06View sourceSee grades on GitHubMore from stanfish06

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