Generate exactly one child hypothesis that improves logical coherence, causal consistency, and assumption hygiene.
Scanned 9/7/2026
Install to Claude Code
npx -y skills add panjose/Co-Scientist --skill hypothesis-evolve-coherence --agent claude-codeInstalls into .claude/skills of the current project.
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---
name: hypothesis-evolve-coherence
description: Generate exactly one child hypothesis that improves logical coherence, causal consistency, and assumption hygiene.
---
# hypothesis-evolve-coherence
Goal:
- Generate exactly one child hypothesis that improves logical coherence, causal consistency, and assumption hygiene.
Inputs:
- `research_plan/RESEARCH_PLAN.json`
- selected parent `hypotheses/<id>/HYPOTHESIS.json` artifacts
- parent review artifacts
- active `state/STRATEGY_PLAN.json`
Outputs:
- `hypotheses/<id>/HYPOTHESIS.json`
- `hypotheses/<id>/HYPOTHESIS.md`
- `hypotheses/<id>/ORIGIN.json`
Context Loading:
- Open `skills/shared-references/schema-index.md`.
- Read `packages/agent_contracts/hypothesis.py` and confirm the exact `HypothesisContract` shape before writing `hypotheses/<id>/HYPOTHESIS.json`.
- Read `research_plan/RESEARCH_PLAN.json`.
- Read `state/STRATEGY_PLAN.json`.
- Read each selected parent hypothesis and its review bundle.
- Confirm that the round selected `coherence_evolution`.
Execution Prompt Contract:
- System Intent:
- You are repairing contradictions, invalid assumptions, and causal gaps in the parent hypothesis.
- Required Reasoning Focus:
- Remove internal contradictions first.
- Tighten the causal chain so each step is explicit and testable.
- Preserve novelty while reducing logical fragility.
- Do Not Do:
- Do not add unrelated speculative branches.
- Do not emit multiple candidate repairs.
- Quality Floor:
- The child must directly address at least one specific weakness from the parent review bundle.
- `origin.content.statement` must name concrete materials, catalysts, reaction conditions, mechanistic variables, or experimental targets from the parent and research goal.
- `origin.content.mechanism` must explain a causal chain; do not write only generic phrases such as `improved mechanism`, `targeted improvement`, or `review-identified weaknesses`.
- `origin.content.experimental_design` must include 3-6 numbered steps with measurable readouts, controls, or decision thresholds.
- Do not use generic refinement placeholder steps such as `Apply targeted improvement`, `Characterize with standard techniques`, `Benchmark against parent`, or `Validate improvement quantitatively`.
- If the research plan, parent hypothesis, or parent review bundle is missing, stop and report the missing artifact instead of guessing.
- Output Shape:
- Emit the canonical `HypothesisContract`.
- `origin.strategy`: `coherence_evolution`
- Populate the full nested content block, including non-empty `summary` and `category`.
Execution Steps:
1. Open `skills/shared-references/schema-index.md`, then read `packages/agent_contracts/hypothesis.py` before writing `hypotheses/<id>/HYPOTHESIS.json`.
2. Identify the coherence failures in the parent set.
3. Produce exactly one corrected child hypothesis.
4. Persist canonical `HYPOTHESIS.json`, `HYPOTHESIS.md`, and `ORIGIN.json`.
5. Validate the emitted hypothesis artifact.
Completion Rule:
- This skill is complete only when one logically improved child hypothesis has been written in canonical form.
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