Submit compact Human Protein Atlas requests for gene JSON, search downloads, and page-level tissue or cell-line lookups. Use when a user wants concise Human Protein Atlas summaries; save raw JSON or HTML only on request.
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---
name: x-openai-human-protein-atlas-skill-b142063
description: Submit compact Human Protein Atlas requests for gene JSON, search downloads, and page-level tissue or cell-line lookups. Use when a user wants concise Human Protein Atlas summaries; save raw JSON or HTML only on request.
---
### 导出副本边界与技能别名
迁移、安装、修复和经验回写只作用于当前加载的目标宿主技能副本。原 Codex 技能/MCP、下载的源码和 `original-skills` 均为来源材料,不因执行本副本而写入;只有用户另行明确要求配置 Codex 产品本身时,才按该产品流程处理指定目标。脚本需要安装目录或状态目录时,显式提供目标路径;不得从 `CODEX_HOME` 隐式推断写入位置。
跨技能名称可能沿用源库别名。先查 [技能别名表](../../skill-aliases.json),优先选择同来源、同插件的条目,再使用其 `id` 调用或读取对应入口;不得假定旧 `$skill`、`superpowers:skill` 名称在新宿主直接注册。不能确定目标时先核对,不替换真实产品命令或 Shell 环境变量。
## 跨宿主使用约定
本副本供支持 Agent Skills 的客户端使用。先检查当前宿主实际提供的工具、权限和已连接服务,再执行正文工作流。原文中的宿主工具标识是能力参考;只有实际发现该工具时才可调用,其他宿主应使用经核验的等价 MCP、CLI 或 API。没有等价能力的步骤必须报告不可用,不能虚构调用或完成状态。
技能资源以本技能目录为基准;输出写入当前项目中用户指定的位置。通过技能名称或自然语言触发,具体快捷命令由宿主决定。涉及真实产品、模型 API、协议字段和官方网址的名称保持原意。授权、审批、隐私和工具范围限制在迁移后仍然有效;不得为兼容而扩大权限。具体依赖与迁移说明见同目录 `PORTABILITY.md`。
## Operating rules
- Use `scripts/rest_request.py` for all Human Protein Atlas calls.
- Use `base_url=https://www.proteinatlas.org`.
- The script accepts `max_items`; single gene entry lookups usually do not need it, while search and download endpoints are better with `max_items=10`.
- Re-run requests in long conversations instead of relying on older tool output.
- Treat displayed `...` in tool previews as UI truncation, not literal request content.
- If the user asks for full HTML or JSON, set `save_raw=true` and report the saved file path instead of pasting large payloads into chat.
## Execution behavior
- Return concise markdown summaries from the script JSON by default.
- Return the script JSON verbatim only if the user explicitly asks for machine-readable output.
- Prefer these paths: `<ENSG>.json`, `api/search_download.php`, `search/tissue/<symbol>`, and `search/cellline/<symbol>`.
- For page-level search endpoints, prefer `response_format=text` so the script returns only `text_head` unless raw output is requested.
## Input
- Read one JSON object from stdin.
- Required fields: `base_url`, `path`
- Optional fields: `method`, `params`, `headers`, `json_body`, `form_body`, `record_path`, `response_format`, `max_items`, `max_depth`, `timeout_sec`, `save_raw`, `raw_output_path`
- Common HPA patterns:
- `{"base_url":"https://www.proteinatlas.org","path":"ENSG00000141510.json"}`
- `{"base_url":"https://www.proteinatlas.org","path":"api/search_download.php","params":{"search":"TP53","format":"json","columns":"g,gs,tissue","compress":"no"},"max_items":10}`
- `{"base_url":"https://www.proteinatlas.org","path":"search/tissue/TP53","response_format":"text"}`
## Output
- Success returns `ok`, `source`, `path`, `method`, `status_code`, `warnings`, and either compact `records`, a compact `summary`, or `text_head`.
- Use `raw_output_path` when `save_raw=true`.
- Failure returns `ok=false` with `error.code` and `error.message`.
## Execution
```bash
echo '{"base_url":"https://www.proteinatlas.org","path":"ENSG00000141510.json"}' | python scripts/rest_request.py
```
## References
- No additional runtime references are required; keep the import package limited to this file and `scripts/rest_request.py`.