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Tools & Automation
CLI tools, utilities, converters, workflow automation, and productivity helpers
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Showing 16,129–16,152 of 48,984 skills
- Bio Reference OperationsGenerate consensus sequences and manage reference files using samtools. Use when creating consensus from alignments, indexing references, or creating sequence dictionaries.Votes: 0GitHub stars: 4
- Bio Alignment SortingSort alignment files by coordinate or read name using samtools and pysam. Use when preparing BAM files for indexing, variant calling, or paired-end analysis.Votes: 0GitHub stars: 4
- Parallax Make House ViewSynthesize a draft Parallax house view by orchestrating macro_analyst + get_telemetry MCP outputs across the 14 weighted markets, route the draft through the shared confirmation gate, and save through the same path /parallax-load-house-view uses. The synthesized view carries `generator_synthesis` provenance (distinct from ingested views' `prose_extraction`) and lands in `~/.parallax/active-house-view/` like any other house view. Use when the bank has no CIO take to ingest, when prepping a Par...Votes: 0GitHub stars: 5
- Parallax Macro OutlookFull macro regime analysis with optional equity screening: country coverage, economic outlook, regime signals, factor tilt implications, and top-scoring equities in the target market via Parallax MCP tools. Anchored on the regime question ('what is the regime in [market]?'). NOT for country/region equity discovery ('what should I buy in [country]?' — use /parallax-country-deep-dive), not for portfolio-level morning briefs (use /parallax-morning-brief), not for single stock analysis (use /para...Votes: 0GitHub stars: 5
- Parallax Watchlist MonitorMonitor a watchlist of tickers: flag score changes, news alerts, technical shifts, and analyst updates via Parallax MCP tools. Provide list of symbols. NOT for single stock analysis (use /parallax-deep-dive), not for portfolio diagnostics (use /parallax-morning-brief), not for weighted client books ranked by who to call (use /parallax-desk-call-list), not for building a portfolio (use /parallax-portfolio-builder).Votes: 0GitHub stars: 5
- Parallax Score ExplainerExplain Parallax scores, factors, and methodology in plain language. Why does a stock score this way? What would change it? Uses methodology docs and score data. NOT for stock analysis (use /parallax-should-i-buy), not for deep dives (use /parallax-deep-dive), not for portfolio diagnostics (use /parallax-portfolio-checkup).Votes: 0GitHub stars: 5
- Parallax Peer ComparisonResearch analyst peer comparison: peer snapshot, exported data, score trend analysis, and relative price performance via Parallax MCP tools. Compare two named companies, an explicit set of up to three names, or one stock against automatic peers. Symbols in RIC format. NOT for single stock analysis (use /parallax-deep-dive), not for a quick single-name check (use /parallax-should-i-buy), not for full due diligence (use /parallax-due-diligence), not for portfolio analysis (use /parallax-morning...Votes: 0GitHub stars: 5
- Parallax Pair FinderLong/short equity pair builder: given one leg, suggest top-3 counter-leg candidates from peers; given both legs, report residual factor / sector / macro / dollar / beta exposure. Symbols in RIC format. NOT for single-stock analysis (use /parallax-deep-dive), not for peer comparison tables (use /parallax-peer-comparison), not for portfolio analysis (use /parallax-morning-brief), not for long-only screening (use /parallax-thematic-screen).Votes: 0GitHub stars: 5
- Parallax Macro OutlookFull macro regime analysis with optional equity screening: country coverage, economic outlook, regime signals, factor tilt implications, and top-scoring equities in the target market via Parallax MCP tools. Anchored on the regime question ('what is the regime in [market]?'). NOT for country/region equity discovery ('what should I buy in [country]?' — use /parallax-country-deep-dive), not for portfolio-level morning briefs (use /parallax-morning-brief), not for single stock analysis (use /para...Votes: 0GitHub stars: 5
- Parallax Earnings QualityForensic earnings quality analysis: revenue recognition patterns, accruals, quality sub-scores, manipulation risk, and hidden risk detection via Parallax MCP tools. Symbol in RIC format. NOT for general stock analysis (use /parallax-deep-dive), not for full due diligence (use /parallax-due-diligence), not for a quick stock check (use /parallax-should-i-buy), not for credit-risk scoring (use /parallax-credit-lens).Votes: 0GitHub stars: 5
- Parallax Due DiligenceFull research analyst due diligence: all financial statements, Palepu framework, technicals, news, score trends, and full Parallax research report via Parallax MCP tools. Symbol in RIC format. NOT for quick checks (use /parallax-should-i-buy), not for position deep dives without Palepu (use /parallax-deep-dive), not for peer-set comparison only (use /parallax-peer-comparison), not for a client-branded rendering of the research report (use /parallax-white-label-stock-report), not for forensic ...Votes: 0GitHub stars: 5
- Parallax Desk Call ListDesk-level morning call list for relationship managers covering multiple client books: detects overnight price moves across the union of symbols held desk-wide, then ranks clients by weighted book impact and drafts per-client talk tracks. Reads a saved desk book from ~/.parallax/desk-book/, or accepts an inline array of {client_name, portfolio}. Triggers on 'who do I call this morning', 'desk call list', 'which clients are affected'. NOT for a single portfolio (use /parallax-morning-brief), n...Votes: 0GitHub stars: 5
- Parallax Credit LensCredit risk assessment for publicly traded companies: leverage, coverage, liquidity, solvency (Palepu), Altman Z-score, and traffic-light credit health signals on published absolute thresholds. Symbol in RIC format (AAPL.O, JPM.N). NOT for portfolio credit risk (use /parallax-scenario-analysis), not for private companies (requires document ingestion; not covered), not for forensic earnings-quality screening (use /parallax-earnings-quality), not for single-stock fundamental analysis (use /para...Votes: 0GitHub stars: 5
- Parallax Country Deep DiveCountry or region equity discovery: which equities screen strongest in a market — macro context, available equity coverage, top-scoring stocks, and investment opportunities via Parallax MCP tools. Anchored on the allocation question. NOT for macro regime reads ('what is the regime in [market]?' — use /parallax-macro-outlook), not for thematic screening (use /parallax-thematic-screen), not for single stock analysis (use /parallax-deep-dive).Votes: 0GitHub stars: 5
- Super SearchSearch your coding memory. Use when user asks about past work, previous sessions, how something was implemented, what they worked on before, or wants to recall information from earlier sessions.Votes: 0GitHub stars: 36
- Super SaveSave important project knowledge to memory. Use when user wants to preserve architectural decisions, significant bug fixes, design patterns, or important implementation details for team reference.Votes: 0GitHub stars: 36
- Git PushingStage, commit, and push git changes with conventional commit messages. Use when user wants to commit and push changes, mentions pushing to remote, or asks to save and push their work. Also activate...Votes: 0GitHub stars: 36
- Ribo SeqWorkflow for ribosome profiling, P-site aware preprocessing, periodicity checks, ORF detection, and translation efficiency analysis.Votes: 0GitHub stars: 26
- SetupFirst-time setup for protein design tools. Use this skill when: (1) User is new and hasn't run any tools yet, (2) Commands fail with "file not found" or "modal: command not found", (3) Modal authentication errors occur, (4) User asks how to get started or set up the environment, (5) biomodals directory is missing or tools aren't working.Votes: 0GitHub stars: 26
- Binder Design Campaign ManagerBinder design campaign planning, monitoring, and troubleshooting. Use this skill when: (1) Planning a complete binder design campaign, (2) Converting high-level goals into runnable pipelines, (3) Assessing campaign health and pass rates, (4) Diagnosing why designs are failing QC, (5) Estimating time, cost, and expected yields, (6) Selecting between design tools for a specific target. This skill orchestrates the other protein design tools. For individual tool parameters, use the specific tool...Votes: 0GitHub stars: 26
- Chip SeqChIP-seq peak calling and downstream interpretation with MACS3, signal track export, annotation, motif analysis, and differential binding review.Votes: 0GitHub stars: 26
- Rental ListingWrites rental property listings with amenity highlights, qualification requirements, and application instructions.Votes: 0GitHub stars: 3
- Tutorial WriterCreates step-by-step tutorials with screenshot placeholders, code snippets, and troubleshooting sections. Use this skill when a user needs to write a how-to guide, help documentation, onboarding walkthrough, or educational tutorial for their product, tool, or process.Votes: 0GitHub stars: 3
- Srs WorkflowFull SRS workflow: Brainstorm → Spec → Plan (per-section files) → User Review → SRS Generation → Validation → Improvement Report → Context Save. Use when user provides a project topic and wants a complete requirements pipeline.Votes: 0GitHub stars: 19