All categories
Tools & Automation
CLI tools, utilities, converters, workflow automation, and productivity helpers
- 49,015
- 2,043
Security grades appear on each card once the skill has been scanned. Newly imported skills may briefly show without a grade until the backfill job runs.
Open in full browserBrowse tools & automation skills
Showing 15,625–15,648 of 49,015 skills
- Protein Interaction NetworkProtein Interaction Network Analysis - Build protein interaction network: map identifiers with STRING, get PPI network, compute enrichment, and link to KEGG pathways. Use this skill for systems biology tasks involving mapping identifiers get string network interaction get ppi enrichment kegg link. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Protein Function AnnotationProtein Function Annotation Pipeline - Annotate protein function: UniProt metadata, InterPro domains, functional prediction, and GO enrichment. Use this skill for proteomics tasks involving query uniprot query interpro predict protein function get functional enrichment. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Protein EngineeringProtein Engineering Workflow - Engineer a protein: predict structure, identify functional residues, predict beneficial mutations, and calculate properties. Use this skill for protein engineering tasks involving Protein structure prediction ESMFold predict functional residue zero shot sequence prediction calculate protein sequence properties. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Protein Database CrossrefProtein Cross-Database Reference - Cross-reference protein: UniProt entry, NCBI gene, Ensembl xrefs, and PDB structure search. Use this skill for proteomics tasks involving get uniprotkb entry by accession get gene metadata by gene name get xrefs symbol retrieve protein data by pdbcode. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Protein Classification AnalysisProtein Classification Analysis - Classify protein: ChEMBL protein classification, UniProt entry, InterPro domains, and Ensembl biotypes. Use this skill for protein science tasks involving search protein classification get uniprotkb entry by accession query interpro get info biotypes. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Protein Blast SearchSearch for similar protein sequences in UniProt Swiss-Prot database using BLAST to identify homologous proteins and functional relationships.Votes: 0GitHub stars: 170
- Mutation Impact AnalysisMutation Impact Analysis - Analyze mutation impact: predict structure, predict mutations from sequence and structure, and check variant effects with Ensembl VEP. Use this skill for molecular biology tasks involving pred protein structure esmfold zero shot sequence prediction predict zero shot structure get vep hgvs. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Molecular Visualization SuiteMolecular Visualization Suite - Visualize molecules: convert SMILES to formats, visualize molecule, visualize protein, visualize complex. Use this skill for chemical visualization tasks involving convert smiles to format visualize molecule visualize protein visualize complex. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 170
- Metabolomics PathwayMetabolomics Pathway Analysis - Analyze metabolomics: compound identification, KEGG pathway mapping, enzyme links, and PubChem data. Use this skill for metabolomics tasks involving search pubchem by name kegg find kegg link kegg get. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Lab Protocol From LiteratureLab Protocol from Literature - Extract and generate lab protocol: search PubMed, extract protocol from paper, and generate executable protocol. Use this skill for lab science tasks involving pubmed search extract protocol from pdf protocol generation generate executable json. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Interproscan PipelineInterProScan Analysis Pipeline - Run InterProScan for domain analysis, then enrich with UniProt data and STRING interactions. Use this skill for functional proteomics tasks involving interproscan analyze get uniprotkb entry by accession get functional enrichment query interpro. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Full Protein AnalysisFull Protein Characterization - Complete protein characterization: validate sequence, compute all properties, predict structure, and analyze pockets. Use this skill for protein biochemistry tasks involving is valid protein sequence analyze protein ComputeProtPara pred protein structure esmfold run fpocket. Combines 5 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Enzyme EngineeringEnzyme Active Site Engineering - Engineer enzyme: identify active site residues, predict pocket, analyze binding site, and predict mutations. Use this skill for enzymology tasks involving predict functional residue run fpocket get binding site by id pred mutant sequence. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Disease Protein ProfilingDisease Protein Profiling - Profile a disease protein: UniProt data, AlphaFold structure, InterPro domains, phenotype associations from Ensembl. Use this skill for medical proteomics tasks involving query uniprot download alphafold structure query interpro get phenotype gene. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Blast Protein AnalysisBLAST & Protein Analysis Pipeline - BLAST search followed by comprehensive protein analysis: BLAST, then structure prediction, properties, and function. Use this skill for sequence bioinformatics tasks involving blast search pred protein structure esmfold calculate protein sequence properties predict protein function. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Binding Site CharacterizationBinding Site Characterization - Characterize binding sites: predict pockets with fpocket and P2Rank, get binding site info from ChEMBL, and visualize. Use this skill for structural biology tasks involving run fpocket pred pocket prank get binding site by id visualize protein. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Antibody Target AnalysisAntibody-Target Analysis - Analyze an antibody target: UniProt protein info, InterPro domains, protein properties, and biotherapeutic data from ChEMBL. Use this skill for immunology tasks involving get uniprotkb entry by accession query interpro ComputeProtPara get biotherapeutic by name. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Higgsfield GenerateGenerate images/videos via Higgsfield AI. Default focus: GPT Image 2 for images/design/text, Seedance 2.0 for video, Nano Banana 2/Pro for character and reference-driven image work, and Marketing Studio for ads with avatars/products/hooks/settings. Also supports specialist Soul V2/Cinema/Cast/Location and Kling 3.0. Use when: "generate an image", "make a picture", "make a video", "animate this photo", "image-to-video", "edit/stylize/remix this image", "produce a clip", "create an ad", "make a...Votes: 0GitHub stars: 2
- Browser HarnessDirect browser control via CDP. Use when the user wants to automate, scrape, test, or interact with web pages. Connects to the user's already-running Chrome.Votes: 0GitHub stars: 2
- Value ChainMap a thesis's position in its value chain — who it buys from, sells to, and competes with; where the bottleneck and pricing power sit; and whether it owns a critical layer. Use when user says "value chain", "supply chain position", "where does [TICKER] sit", or "who are [TICKER]'s suppliers/customers".Votes: 0GitHub stars: 3
- Macro ExposureTag a thesis's implicit macro bets — the macro variables its bull case is secretly levered to (AI capex, rates, FX, China decoupling, memory/HBM cycle, energy, regulation) with direction and magnitude. Use when user says "macro exposure", "what macro is [TICKER] betting on", "macro bets", or "rate exposure for [TICKER]".Votes: 0GitHub stars: 3
- GraphRebuild the vault dependency graph (_graph.md) via the deterministic generator script. /graph forces a full rebuild; /graph last (run after every /sync) rebuilds only if the vault changed; /graph [N] is treated as last. The generator reads the vault and writes _graph.md directly, so the file never streams through a model response.Votes: 0GitHub stars: 3
- GraphRebuild the vault dependency graph (_graph.md) via the deterministic generator script. $graph forces a full rebuild; $graph last (run after every $sync) rebuilds only if the vault changed; $graph [N] is treated as last. The generator reads the vault and writes _graph.md directly, so the file never streams through a model response.Votes: 0GitHub stars: 3
- ReleaseCut and publish a new release of Diablo II Ultra Utility. Use when the user wants to ship a new version / update — "release a new version", "publish an update", "cut a release", "bump and release", "выпусти обновление", "зарелизь". Windows-only; bumps the version, builds the signed MSI, tags & pushes, then creates the GitHub release with the MSI + latest.json so auto-update works.Votes: 0GitHub stars: 13