All categories
Tools & Automation
CLI tools, utilities, converters, workflow automation, and productivity helpers
- 47,591
- 1,983
Security grades appear on each card once the skill has been scanned. Newly imported skills may briefly show without a grade until the backfill job runs.
Open in full browserBrowse tools & automation skills
Showing 14,641–14,664 of 47,591 skills
- Gene Family EvolutionGene Family Evolution Analysis - Analyze gene family evolution: CAFE gene tree, homology, Ensembl gene tree, and taxonomy. Use this skill for molecular evolution tasks involving get cafe genetree member symbol get homology symbol get genetree member symbol get taxonomy classification. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 170
- Gene Expression AtlasGene Expression Atlas - Build gene expression atlas: TCGA cancer expression, NCBI gene info, Ensembl gene details, and literature search. Use this skill for transcriptomics tasks involving get gene expression across cancers get gene metadata by gene name get lookup symbol search literature. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Gene Disease AssociationGene-Disease Association Analysis - Analyze gene-disease associations: NCBI gene metadata, OpenTargets disease associations, TCGA expression, and Monarch phenotypes. Use this skill for medical genetics tasks involving get gene metadata by gene name get associated targets by disease efoId get gene expression across cancers get joint associated diseases by HPO ID list. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Gene Comprehensive LookupGene Comprehensive Lookup - Comprehensive gene lookup: NCBI gene data, Ensembl gene info, UniProt protein data, and KEGG pathway links. Use this skill for bioinformatics tasks involving get gene metadata by gene name get lookup symbol get general info by protein or gene name kegg find. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Epigenomic LandscapeEpigenomic Landscape Mapping - Map epigenomic landscape: overlapping features, regulatory elements, binding matrices, and phenotype links. Use this skill for epigenomics tasks involving get overlap region get phenotype region get species binding matrix get track data. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Ensembl Sequence RetrievalRetrieve genomic sequences from Ensembl database using transcript or gene IDs to obtain nucleotide and protein sequences.Votes: 0GitHub stars: 170
- Cross Species GenomicsCross-Species Comparative Genomics - Compare genomes across species: Ensembl compara, alignment, gene trees, and NCBI taxonomy. Use this skill for comparative genomics tasks involving get info compara species sets get alignment region get genetree member symbol get taxonomy. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Chromosome AnalysisChromosome Structure Analysis - Analyze chromosome: NCBI summary, UCSC cytoband, genome sequence, and Ensembl assembly info. Use this skill for cytogenetics tasks involving get chromosome summary get cytoband get chromosome sequence get info assembly. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Biosample GenomicsBioSample & Genome Cross-Reference - Cross-reference biosample and genome data: NCBI biosample, genome report, sequence reports, and taxonomy. Use this skill for genomics tasks involving get biosample report get genome dataset report by accession get genome sequence reports get taxonomy. Combines 4 tools from 1 SCP server(s).Votes: 0GitHub stars: 170
- Biomarker DiscoveryBiomarker Discovery Pipeline - Discover biomarkers: TCGA differential expression, NCBI gene data, OpenTargets associations, and clinical relevance. Use this skill for precision medicine tasks involving tcga differential expression analysis get gene metadata by gene name get associated targets by disease efoId clinvar search. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Wind Site AssessmentAssess wind energy potential and perform site analysis using atmospheric science calculations.Votes: 0GitHub stars: 170
- Seawater Sound Speed CalculationCalculate sound speed in seawater from practical salinity, temperature, and pressure using the Gibbs Seawater Oceanographic Toolbox.Votes: 0GitHub stars: 170
- Seawater Freezing TemperatureCalculate the freezing point temperature of seawater from absolute salinity and pressure using GSW thermodynamic equations.Votes: 0GitHub stars: 170
- Atmospheric Science CalculationsCalculate atmospheric parameters including Coriolis parameter, geostrophic wind, heat index, potential temperature, and dewpoint for meteorology and climate science.Votes: 0GitHub stars: 170
- Ssh Long SessionManage long-running remote SSH jobs through tmux and inspect their output safely.Votes: 0GitHub stars: 170
- Substructure Activity SearchSubstructure-Activity Relationship - Analyze substructure-activity: ChEMBL substructure search, activity data, PubChem compounds, and similarity. Use this skill for medicinal chemistry tasks involving get substructure by smiles search activity search pubchem by smiles calculate smiles similarity. Combines 4 tools from 3 SCP server(s).Votes: 0GitHub stars: 170
- Pubchem Smiles SearchSearch PubChem database using SMILES strings to retrieve compound information and chemical properties.Votes: 0GitHub stars: 170
- Pubchem Deep DivePubChem Deep Dive Analysis - Deep dive into PubChem: compound info, bioassay summary, 3D conformers, synonyms, and general description. Use this skill for chemical databases tasks involving get pubchem compound by cid get assay summary by cid get conformers by cid get compound synonyms by name get general info by compound name. Combines 5 tools from 1 SCP server(s).Votes: 0GitHub stars: 170
- Polymer Property AnalysisPolymer & Material Property Analysis - Analyze polymer properties: composition, symmetry, density, and lattice parameters for material design. Use this skill for polymer science tasks involving MaterialCompositionAnalyzer CalculateSymmetry CalculateDensity MofLattice. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Natural Product AnalysisNatural Product Analysis - Analyze natural products: name to SMILES, PubChem lookup, structural analysis, and KEGG natural product search. Use this skill for natural products chemistry tasks involving NameToSMILES search pubchem by name ChemicalStructureAnalyzer kegg find. Combines 4 tools from 4 SCP server(s).Votes: 0GitHub stars: 170
- Molecular Similarity SearchSearch for similar molecules using Tanimoto similarity with Morgan fingerprints to identify structurally related compounds.Votes: 0GitHub stars: 170
- Molecular Properties CalculationCalculate basic molecular properties from SMILES including molecular weight, formula, atom counts, and exact mass.Votes: 0GitHub stars: 170
- Molecular Fingerprint AnalysisMolecular Fingerprint Analysis - Fingerprint analysis: topology descriptors, structure complexity, similarity calculation, and AromaticityAnalysis. Use this skill for cheminformatics tasks involving calculate mol topology calculate mol structure complexity calculate smiles similarity AromaticityAnalyzer. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170
- Functional Group ProfilingFunctional Group Profiling - Profile functional groups: radical assignment, H-bond analysis, aromaticity, and abbreviation condensation. Use this skill for organic chemistry tasks involving AssignRadicals GetHBANum AromaticityAnalyzer CondenseAbbreviationSubstanceGroups. Combines 4 tools from 2 SCP server(s).Votes: 0GitHub stars: 170