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Tools & Automation
CLI tools, utilities, converters, workflow automation, and productivity helpers
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Showing 8,929–8,952 of 47,645 skills
- Complexa TargetUse this skill whenever the user wants to add, register, edit, list, show, or validate a Proteina-Complexa design target for any pipeline — protein binder (default), ligand binder, or AME / enzyme scaffolding. Triggers include "add a target", "define a new target for binder design", "register a hotspot", "set up a PDL1 binder target", "ligand binder pocket", "SMILES target", "AME task", "enzyme motif", "M0024_1nzy", "complexa target add", "complexa target show", "configure target X", "what ta...Votes: 0GitHub stars: 8
- Complexa SweepUse this skill whenever the user wants to run a parameter sweep over a Proteina-Complexa design pipeline — cartesian-product hyperparameter scans, Pareto search over generation/reward/evaluation knobs, or any "compare configurations" workflow. Trigger phrases include "sweep beam width", "sweep nsteps", "hyperparameter sweep", "parameter scan", "scan beam_width and temperature", "compare configurations", "find the best generation params", "what's the optimal nsteps", "Pareto search for binder ...Votes: 0GitHub stars: 8
- Complexa SlurmUse when launching Proteina-Complexa jobs on a remote SLURM cluster, including binder search, LaProteina design or training, multi-node runs, sbatch, remote GPU jobs, Hydra sweeps, rsync-to-cluster workflows, `--on-cluster`, grizzly or polar, and singleton requeue chains.Votes: 0GitHub stars: 8
- Complexa DesignEnd-to-end Proteina-Complexa design pipeline driver. Use when the user wants to "design a binder", "design binders for X", "run complexa design", "de novo binder", "PDL1 binder", "TrkA binder", "design proteins for target", "protein binder design", "ligand binder", "design a small-molecule binder", "ATP-binding protein", "AME motif scaffolding", "scaffold a motif near a ligand", "motif + ligand design", "enzyme scaffolding", "flow matching protein design", "beam-search binder", "FK steering",...Votes: 0GitHub stars: 8
- Code AuditUse for authorized source-code security review and SAST workflows including Semgrep, CodeQL patterns, dangerous API hunting, and fix verification.Votes: 0GitHub stars: 8
- Case ReviewReviews a reverse-skill case package for scope readiness, Evidence to Finding to Path traceability, work item coverage, timeline references, and optional artifact hash integrity before report handoff.Votes: 0GitHub stars: 8
- Build Run DebugBuild, run, and debug macOS apps with shell-first Xcode and Swift workflows. Use when launching apps or diagnosing build, startup, or runtime failures.Votes: 0GitHub stars: 8
- Referencesnarrow React component prop types to match live code pathsVotes: 0GitHub stars: 8
- Browser UseDirect browser control via CDP for web interaction: automation, scraping, testing, screenshots, and site/app work.Votes: 0GitHub stars: 8
- Browser Extension ReverseUse for authorized reverse engineering of browser extensions (Chrome/Firefox) including manifest analysis, background workers, and extension-based credential or traffic logic recovery.Votes: 0GitHub stars: 8
- Boltz Structure And BindingPredict structures and binding for one defined complex with Boltz. Use when folding a protein, RNA, DNA, or ligand complex, docking one ligand, predicting an interface, or scoring binding. Not for screening libraries or design.Votes: 0GitHub stars: 8
- Boltz Small Molecule ScreenScreen existing small-molecule libraries with Boltz. Use when docking, scoring, or ranking a supplied SMILES or compound library against a target; also returns free Tier-1 ADME/ADMET (solubility, permeability, lipophilicity/logD) per molecule. Not for de novo molecule design, one-off docking, or ADME on bare SMILES with no target (use boltz-small-molecule-adme).Votes: 0GitHub stars: 8
- Boltz Small Molecule DesignDesign new small-molecule binders with Boltz. Use when generating novel ligands or hits for a target without a fixed compound library. Not for screening existing molecules or one-off docking.Votes: 0GitHub stars: 8
- Boltz Small Molecule AdmePredict Tier-1 ADME/ADMET for small molecules with Boltz from bare SMILES — no target, no docking. Use when the user wants solubility, permeability, or lipophilicity/logD for a molecule or list of molecules. Not for ranking molecules against a protein target (use boltz-small-molecule-screen, which already returns ADME free).Votes: 0GitHub stars: 8
- Boltz Protein ScreenScreen existing protein binders with Boltz. Use when ranking a supplied protein, peptide, antibody, nanobody, or binder library against a target. Not for designing new proteins or screening small molecules.Votes: 0GitHub stars: 8
- Boltz Protein DesignDesign new protein binders with Boltz. Use when generating protein, peptide, antibody, nanobody, or custom binder candidates for a target. Not for screening existing proteins or small molecules.Votes: 0GitHub stars: 8
- Boltz Cli SetupBoltz CLI setup and auth. Use when installing, updating, verifying, or authenticating `boltz-api`, or fixing missing CLI, PATH, sandbox, browser login, or auth errors.Votes: 0GitHub stars: 8
- Boltz Check StatusBoltz job status and result recovery. Use when listing jobs, checking progress, resuming downloads, recovering results, or downloading an existing job ID. Not for starting new jobs.Votes: 0GitHub stars: 8
- Binlog Failure AnalysisAnalyze MSBuild binary logs to diagnose build failures. USE FOR: build errors that are unclear from console output, diagnosing cascading failures across multi-project builds, tracing MSBuild target execution order, and generally any MSBuild build issues. Requires an existing .binlog file. DO NOT USE FOR: generating binlogs (use binlog-generation), non-MSBuild build systems.Votes: 0GitHub stars: 8
- Automotive EngineerExpert-thinking profile for Automotive Engineer (vehicle integration / powertrain & xEV calibration / chassis dynamics & NVH / durability & fatigue / homologation & functional safety...): Reasons from vehicle-level requirements, regulatory limits, energy/exergy budgets, and distribution-based durability through DFMEA/DVP&R, DoE calibration (INCA, CANape, HIL), Pacejka tire and multibody models, rainflow fatigue, and source-path NVH analysis while treating undocumented build-level and cal-ID d...Votes: 0GitHub stars: 8
- Atac SeqATAC-seq processing with assay QC, MACS3 peak calling, consensus peak matrices, differential accessibility, and motif or footprint follow-up.Votes: 0GitHub stars: 8
- Appkit InteropBridge macOS SwiftUI into AppKit narrowly. Use when implementing representables, reaching NSWindow or panels, handling menus, or using the responder chain.Votes: 0GitHub stars: 8
- Alterlab Qiime2 AmpliconRuns 16S/ITS amplicon (microbiome) analysis with the QIIME 2 amplicon distribution (2026.1; renamed to "qiime2" in 2026.4) in the correct order: manifest import, cutadapt trim-paired primer removal BEFORE dada2 denoise-paired (trunc-len chosen from the demux quality .qzv), feature-classifier classify-sklearn against a version-matched SILVA 138 or Greengenes2 classifier, and diversity core-metrics-phylogenetic — teaching the .qza/.qzv artifact-and-provenance model and the 2026.1 feature-table ...Votes: 0GitHub stars: 8
- Airtable OverviewExplains what Airtable is and how data is structured — bases, tables, fields, records, views, automations, and interfaces. Use when you need context about the Airtable data model.Votes: 0GitHub stars: 8