Tools & Automation

CLI tools, utilities, converters, workflow automation, and productivity helpers

skills in category: 47,643
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Showing 7,321–7,344 of 47,643 skills

Alterlab GgetARun fast one-liner queries to 20+ bioinformatics databases from the gget CLI or Python — gene info (Ensembl), BLAST, AlphaFold structures, Enrichr enrichment, and more. Use for quick interactive lookups of genes, sequences, structures, or pathways — for batch processing or advanced BLAST use biopython, for multi-database Python workflows use bioservices. Part of the AlterLab Academic Skills suite.toolspythonbashVotes: 0GitHub stars: 36
Alterlab Genai Camera DirectorAThis skill should be used when the user asks about "camera moves", "AI camera presets", "dolly", "crane shot", "orbit shot", "crash zoom", "bullet time", "360 orbit", "FPV arc", "pan", "tilt", "dutch angle", "tracking shot", "Higgsfield camera", "Cinema Studio", "camera direction", "cinematic grammar", "Sora 2 Presets", "Higgsfield Assist", "Soul Cast", "content scoring", "act as a camera director", "camera director mode", "camera language", "lens selection", "focal length", "21:9 cinematic",...toolsrustgoVotes: 0GitHub stars: 36
Alterlab DeeptoolsAProcess and visualize deep-sequencing coverage with the deepTools CLI — convert BAM to bigWig (bamCoverage), build log2 ratio tracks (bamCompare), run QC (multiBamSummary correlation, PCA, plotFingerprint), apply the ATAC-seq Tn5 shift (alignmentSieve --ATACshift), and make TSS/peak heatmaps and profiles (computeMatrix, plotHeatmap, plotProfile). Use for coverage tracks, signal heatmaps/profiles, normalization (RPGC/CPM/RPKM), and effective-genome-size lookups for ChIP-seq, ATAC-seq, MNase-se...toolspythongoVotes: 0GitHub stars: 36
Agent Manager SkillAEmployee agent lifecycle management system. Use when working with agents/ directory employee agents - starting, stopping, monitoring, or assigning tasks to Dev/QA agents running in tmux sessions. Completely independent of CAO, uses only tmux + Python.toolspythonbashVotes: 0GitHub stars: 36
Python ToolingAPython project tooling: pyproject.toml as the single source of truth, package managers (pip, Poetry, uv, pipenv), virtual environments, lockfiles, ruff (lint + format), mypy (type checking), and console scripts / entry points. Stack-agnostic — referenced by every Python plugin in the marketplace. Use this skill to: - Read pyproject.toml (or requirements.txt / Pipfile) to learn which package manager and Python version the project uses. - Install, add, and remove dependencies with the project'...toolspythongoVotes: 0GitHub stars: 35
Composer ToolingAComposer conventions for any PHP project: dependency management, version constraints, PSR-4 autoloading, scripts, platform requirements, and the composer.json vs composer.lock contract. Stack-agnostic — referenced by every PHP plugin in the marketplace. Use this skill to: - Read composer.json to detect the PHP version, framework, and key packages before writing code. - Add dependencies with correct version constraints and the right require vs require-dev placement. - Configure PSR-4 autoload...toolsphpbashVotes: 0GitHub stars: 35
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Dotnet ToolingA.NET SDK and NuGet tooling conventions: dotnet CLI commands (new/build/run/test/publish/restore/format), NuGet package management (PackageReference, Directory.Packages.props central package management, packages.lock.json), project file conventions (.csproj, .sln, global.json, Directory.Build.props), multi-targeting, and dotnet format. Stack-agnostic — referenced by every .NET plugin in the marketplace. Use this skill to: - Detect the .NET SDK version and run all commands via the dotnet CLI. ...toolsgoc#Votes: 0GitHub stars: 35
Jev SetupAUse when Jev is not working yet, a Jev tool reports no_key or auth_failed, or the person asks to connect or fix Jev. Gets their TypeSafe or OpenRouter key into the secret store, unseen by you.toolsrustgoVotes: 0GitHub stars: 1,042
Jev Frontier WorkBUse when a task is already judged hard — pick which paid frontier seat takes it, then keep Jev watching the delegated run so it interrupts you only when the run needs a decision.toolsgobashVotes: 0GitHub stars: 1,042
Jev CompactionAUse when a transcript has to be cut to a fixed size and you must choose which turns go. Jev marks each turn keep, summarize or drop. Measured: it does not make a handoff better.toolsgobashVotes: 0GitHub stars: 1,042
Jev Browser UseAUse when driving a web page in a browser — clicking, typing, navigating, logged-in or JS-rendered pages. Jev picks each step from the elements observed, under a host allowlist and a step budget.toolspythongoVotes: 0GitHub stars: 1,042
Viable McpAHow to use @owlmeans/viable-mcp — the npx MCP server a coding agent drives the OwlMeans Viable platform with — the stdout guard that keeps everything but JSON-RPC off the protocol stream, browser sign-in (`login`/`logout`/`status`/`url`, the `~/.owlmeans` credentials file and its precedence), the lazily opened single-flight session, and the marker-based attach. Auto-invoked when changing the MCP server, its configuration, its sign-in, its startup behaviour, or diagnosing a host that reports t...toolsgoshellVotes: 0GitHub stars: 3
Viable CommonAHow to use @owlmeans/viable-common — the runtime-free contract package of the OwlMeans Viable platform. Covers planning cards and flows (including the landing-gate and tenancy fields), project/story refusals, slot commands and layouts, slot metadata keys, target integrity, connector domain statuses and routes, the intent-first hand-off (`./intent`), shared legal dates (`./legal`), conversion vocabulary, blueprint layer types and case vocabulary, ViableSkill/ViablePersona names, what belongs h...toolsgoshellVotes: 0GitHub stars: 3
Server SocketABind OwlMeans socket protocol declarations to Fastify WebSocket handlers.toolsgoapiVotes: 0GitHub stars: 3
PlanningAHow to use @owlmeans/planning — the runtime-free workcard model (cards, projects, specifications), typed relationships, shareable status flows with three intrinsic states, the Transition event and its pure fold, the schema registry, the query language and its wire encoding, the protocol tree, and the models that work identically on a server and in a browser. Auto-invoked when importing a Workcard type, a status flow, applyHelper, changesHelper, queryHelper, wireHelper, makePlanningProtocols o...toolstypescriptrustVotes: 0GitHub stars: 3
InquiryAThe human-in-the-loop primitive — one question put to a person while a run is in flight. Covers the llm-common contracts (Inquiry, InquiryAnswer, InquiryPolicy, the one answer ceiling), the llm transport registry and ExecutionService.ask, the executionInquiry bridge, the agent ask_user plugin, and the pipeline Waiting/resume path. Use when a run needs a decision that is not its own, when seating or releasing an inquiry channel, or when a run parked Waiting and nothing answered it.toolstypescriptgoVotes: 0GitHub stars: 3
Client RouteAHow to use @owlmeans/client-route — marking a route model as client-side and extracting its :params. Auto-invoked when importing client route helpers.toolstypescriptVotes: 0GitHub stars: 3
Viable McpAHow to use @owlmeans/viable-mcp — the npx MCP server a coding agent drives the OwlMeans Viable platform with — the stdout guard that keeps everything but JSON-RPC off the protocol stream, browser sign-in (`login`/`logout`/`status`/`url`, the `~/.owlmeans` credentials file and its precedence), the lazily opened single-flight session, and the marker-based attach. Auto-invoked when changing the MCP server, its configuration, its sign-in, its startup behaviour, or diagnosing a host that reports t...toolsgoshellVotes: 0GitHub stars: 3
Viable CommonAHow to use @owlmeans/viable-common — the runtime-free contract package of the OwlMeans Viable platform. Covers planning cards and flows (including the landing-gate and tenancy fields), project/story refusals, slot commands and layouts, slot metadata keys, target integrity, connector domain statuses and routes, the intent-first hand-off (`./intent`), shared legal dates (`./legal`), conversion vocabulary, blueprint layer types and case vocabulary, ViableSkill/ViablePersona names, what belongs h...toolsgoshellVotes: 0GitHub stars: 3
VersionsAVersion format and internal dependency ranges in the OwlMeans Common monorepo. Versions are per package and intentionally uneven — releasing is the publishing skill. Use when checking a version, editing internal ranges, or doing a rare whole-repo bump.toolstypescriptgoVotes: 0GitHub stars: 3
Server SocketABind OwlMeans socket protocol declarations to Fastify WebSocket handlers.toolsgoapiVotes: 0GitHub stars: 3
PlanningAHow to use @owlmeans/planning — the runtime-free workcard model (cards, projects, specifications), typed relationships, shareable status flows with three intrinsic states, the Transition event and its pure fold, the schema registry, the query language and its wire encoding, the protocol tree, and the models that work identically on a server and in a browser. Auto-invoked when importing a Workcard type, a status flow, applyHelper, changesHelper, queryHelper, wireHelper, makePlanningProtocols o...toolstypescriptrustVotes: 0GitHub stars: 3
InquiryAThe human-in-the-loop primitive — one question put to a person while a run is in flight. Covers the llm-common contracts (Inquiry, InquiryAnswer, InquiryPolicy, the one answer ceiling), the llm transport registry and ExecutionService.ask, the executionInquiry bridge, the agent ask_user plugin, and the pipeline Waiting/resume path. Use when a run needs a decision that is not its own, when seating or releasing an inquiry channel, or when a run parked Waiting and nothing answered it.toolstypescriptgoVotes: 0GitHub stars: 3
Client RouteAHow to use @owlmeans/client-route — marking a route model as client-side and extracting its :params. Auto-invoked when importing client route helpers.toolstypescriptVotes: 0GitHub stars: 3