Documentation

Docs, README files, API references, tutorials, specs, and changelogs

skills in category: 15,624
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Showing 3,817–3,840 of 15,624 skills

Scikit ImageAA collection of algorithms for image processing in Python. Built on NumPy, SciPy, and Cython. It focuses on scientific image analysis including segmentation, geometric transformations, color space manipulation, analysis, and filtering.documentationpythongoVotes: 0GitHub stars: 8
Rnacentral SkillASubmit compact RNAcentral API requests for RNA entry browsing, single-entry lookup, and cross-reference retrieval. Use when a user wants concise RNAcentral summariesdocumentationpythonbashVotes: 0GitHub stars: 8
QutipAQuantum physics simulation library for open quantum systems. Use when studying master equations, Lindblad dynamics, decoherence, quantum optics, or cavity QED. Best for physics research, open system dynamics, and educational simulations. NOT for circuit-based quantum computing—use qiskit, cirq, or pennylane for quantum algorithms and hardware execution.documentationpythongoVotes: 0GitHub stars: 8
Query UniprotAQuery UniProt protein database. Use when user asks about protein sequences, functions, annotations, domains, or protein identifiers. Triggers on "uniprot", "protein function", "protein sequence", "gene product", "protein info".documentationpythongoVotes: 0GitHub stars: 8
PydicomAPython library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when reading, writing, or modifying medical imaging data in DICOM format, extracting pixel data from medical images (CT, MRI, X-ray, ultrasound), anonymizing DICOM files, working with DICOM metadata and tags, converting DICOM images to other formats, handling compressed DICOM data, or processing medical imaging datasets. Applies to tasks involving medical image analysis, PACS systems, ...documentationpythonrustVotes: 0GitHub stars: 8
Polars BioAHigh-performance genomic interval operations and bioinformatics file I/O on Polars DataFrames. Overlap, nearest, merge, coverage, complement, subtract for BED/VCF/BAM/GFF intervals. Streaming, cloud-native, faster bioframe alternative.documentationpythongoVotes: 0GitHub stars: 8
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Phylogenetics BuilderAEnd-to-end ML phylogenetic tree inference — MSA, trimming, ModelFinder, IQ-TREE2/RAxML-NG.documentationpythongoVotes: 0GitHub stars: 8
Omero IntegrationAMicroscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.documentationpythongoVotes: 0GitHub stars: 8
Notion Knowledge CaptureACapture conversations and decisions into structured Notion pages; use when turning chats/notes into wiki entries, how-tos, decisions, or FAQs with proper linking.documentationrailsdatabaseVotes: 0GitHub stars: 8
NeuroinformaticianAExpert-thinking profile for Neuroinformatician (data standards / BIDS-NWB / reproducible pipelines / archive federation (DANDI, OpenNeuro) / atlas registration): Reasons from FAIR schema, provenance, and pinned software environments through BIDS, NWB, ontologies, versioned Snakemake/Nextflow pipelines, and bids- validator/nwbinspector checks while treating silent metadata failures like wrong NWB units, colliding multi-site subject IDs, unsynced event onsets, and atlas-version...documentationpythongoVotes: 0GitHub stars: 8
Neo4j Migration SkillAMigrates Neo4j driver code and Cypher queries from older versions (4.x, 5.x)documentationjavascriptpythonVotes: 0GitHub stars: 8
Ncbi Entrez SkillASubmit compact NCBI Entrez E-Utilities requests for PubMed, Gene, Protein, Nucleotide, PMC metadata, and GEO metadata workflows. Use when a user wants concise Entrez search, fetch, summary, or link results; save raw JSON or XML only on request.documentationpythongoVotes: 0GitHub stars: 8
Muon Multiomics SinglecellAMulti-modal single-cell analysis with muon/MuData. Joint RNA+ATAC (10x Multiome), CITE-seq (RNA+protein), other multi-omics. MuData holds per-modality AnnData with shared obs. WNN joint embedding, per-modality preprocessing, MOFA factor analysis. Use scanpy-scrna-seq for single-modality RNA; use muon when combining 2+ omics from the same cells.documentationpythongoVotes: 0GitHub stars: 8
Migrating Dbt Core To FusionAUse when a user needs help triaging dbt-core to Fusion migration errors. Runs dbt-autofix first, then classifies remaining errors into actionable categories (auto-fixable, guided fixes, needs input, blocked).documentationrustgoVotes: 0GitHub stars: 8
Matlab Write HelpAGenerate or improve MATLAB help text (documentation comments) for a function, class, or script file following MathWorks standards (H1 line, syntax paragraphs, See Also, 75-char lines). Read BEFORE writing MATLAB help — default patterns (Inputs:/Outputs: lists, block comments, uppercase See Also) produce non-conforming output. Use when writing, rewriting, fixing, or reviewing MATLAB help comments or function documentation.documentationbashgitVotes: 0GitHub stars: 8
Matlab Read DocAGuides the agent to reference official MathWorks Documentation and Help. Determine correct function syntax and workflows from user guides when deeper context is needed. Minimize iterations and repetitive trial and error. Use this skill to: Identify correct syntax and configuration details. Retrieve relevant, version-specific (or release-specific) information from official documentation. Consult user guides when conceptual or workflow context is needed. Apply best practices.documentationgoapiVotes: 0GitHub stars: 8
Matlab Publish ToolboxAVersion-stamp, re-package, and distribute the .mltbx toolbox. Sets version in ToolboxOptions, re-runs packageToolbox, and guides distribution. Requires explicit user confirmation.documentationgobashVotes: 0GitHub stars: 8
Matlab Install ProductsADeterministic workflow to download MATLAB Package Manager (mpm) and install MathWorks products from the OS command line with consistent, repeatable behavior. Use when installing MATLAB, Simulink, toolboxes, or support packages via command line, or setting up scripted installations for CI/CD, containers, or fleet provisioning.documentationpythongoVotes: 0GitHub stars: 8
Matlab Define Toolbox ApiAScan a folder, triage files into include/exclude, identify the public API, and produce a toolboxSpecification.m Interface Spec — all in one pass. Use when turning loose code into a toolbox.documentationgoapiVotes: 0GitHub stars: 8
Matlab Create ProjectACreates a MATLAB project for an existing folder of MATLAB files using the matlab.project.* APIs via MCP. Adds all existing files, configures the project path, generates a project name/description, and creates a README.md with a function table. Prompts the user before creating any new folders. Never overwrites existing files. Use when asked: "create a project", "set up a MATLAB project", "initialize project", "make this a MATLAB project", "configure project".documentationgotestingVotes: 0GitHub stars: 8
Matlab Create Live ScriptACreate, edit, and run plain-text MATLAB live scripts (.m files) with rich text formatting, LaTeX equations, section breaks, and inline figures. Use when generating tutorials, analysis notebooks, reports, documentation, or educational content, when modifying existing live scripts, or when converting existing binary .mlx files to .m for version control. Requires R2025a+.documentationbashgitVotes: 0GitHub stars: 8
Matlab Assess ToolboxAAssess toolbox readiness and suggest improvements — validates help text, tests, coverage, code issues, dependencies, and function signatures. Produces a punch list and can execute fixes via delegate skills on user approval. Use before packaging or when asked to improve a toolbox.documentationgoapiVotes: 0GitHub stars: 8
Litigation Update PostAWrites public-facing litigation updates — blog posts, client alerts, LinkedIn/X posts — on a federal case or legal development. Use to \"write a blog post about…,\" \"draft a client alert on…\"documentationgoVotes: 0GitHub stars: 8
LangfuseAInteract with Langfuse and access its documentation: tracing, monitoring, creating datasets, running experiments, and evaluating AI applications. Use when needing to (1) query or modify Langfuse data, (2) look up Langfuse documentation, concepts, integration guides, a feature or SDK usage, or (3) do any AI engineering task (AI observability, prompt engineering/management, evaluation and evaluator management, experimentation, dataset management, evaluation-driven CI/CD, feedback collection). I...documentationgoshellVotes: 0GitHub stars: 8