Data & Analytics

Joint genotype calling across multiple samples using GATK CombineGVCFs and GenotypeGVCFs. Essential for cohort studies, population genetics, and leveraging VQSR. Use when performing joint genotyping across multiple samples.

Calculate immune repertoire diversity metrics, compare samples, and track clonal dynamics using VDJtools. Use when analyzing repertoire diversity, finding shared clonotypes, or comparing immune profiles between conditions.

--> --- name: bio-splicing-pipeline description: End-to-end alternative splicing analysis from FASTQ to differential splicing results. Aligns with STAR 2-pass mode, performs junction QC, runs rMATS-turbo for differential analysis, and generates sashimi visualizations. Use when performing comprehensive splicing analysis from raw RNA-seq data. tool_type: mixed primary_tool: rMATS-turbo measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - ...

Compute spatial statistics for spatial transcriptomics data using Squidpy. Calculate Moran's I, Geary's C, spatial autocorrelation, co-occurrence analysis, and neighborhood enrichment. Use when computing spatial autocorrelation or co-occurrence statistics.

--> --- name: bio-small-rna-seq-target-prediction description: Predict miRNA target genes using sequence-based algorithms and database lookups. Use when identifying potential mRNA targets of differentially expressed or functionally important miRNAs. tool_type: mixed primary_tool: miRanda measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command ---

--> --- name: bio-small-rna-seq-differential-mirna description: Perform differential expression analysis of miRNAs between conditions using DESeq2 or edgeR with small RNA-specific considerations. Use when identifying miRNAs that change between treatment groups, disease states, or developmental stages. tool_type: r primary_tool: DESeq2 measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command ---

Analyze metabolite-mediated cell-cell communication using MeboCost for metabolic signaling inference between cell types. Predict metabolite secretion and sensing patterns from scRNA-seq data. Use when studying metabolic crosstalk between cell populations or metabolite-receptor interactions.

--> --- name: bio-rna-quantification-tximport-workflow description: Import transcript-level quantifications from Salmon/kallisto into R for gene-level analysis with DESeq2/edgeR using tximport or tximeta. Use when importing transcript counts into R for DESeq2/edgeR. tool_type: r primary_tool: tximport measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- Import transcript-level estimates from Salmon, kal...

--> --- name: bio-rna-quantification-count-matrix-qc description: Quality control and exploration of RNA-seq count matrices before differential expression. Check for outliers, batch effects, and sample relationships. Use when assessing count matrix quality before DE analysis. tool_type: mixed primary_tool: DESeq2 measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- Quality control and exploratory analys...

Render tables, charts, stats, cards, and dashboards as images using HTML templates and wkhtmltoimage.

Shadow AI Monitor - Enterprise-grade dashboard for tracking employee AI tool usage, data exposure risks, and PIPEDA.

Real-time agent dashboard for OpenClaw.

Analyze stocks and cryptocurrencies using Yahoo Finance data.

Health check dashboard for agent platform APIs.

Scrape, analyze, and summarize product reviews from multiple platforms (Amazon, Google, Yelp, TripAdvisor). Extract key insights, sentiment analysis, pros/cons, and recommendations. Use when researching products for arbitrage, creating affiliate content, or making purchasing decisions.

API Keys management UI tab for OpenClaw dashboard.

Query your Shopify store's sales, profitability, customers, and marketing data through Ned's API.

Query weather data and forecasts for farm fields via the Agronomy module.

Export OpenClaw usage data to CSV for analytics tools like Power BI. Hourly aggregates by activity type, model, and channel.

Local Guardian scanner with bundled signatures and dashboard.

Query DataFast website analytics and visitor data via the DataFast API for metrics, time series, realtime stats.

Get detailed routing between two points with distance, duration, and optional turn-by-turn directions. Use when you need navigation instructions or travel time estimates between locations.

Access Pilt fundraising data -- investor matches, campaign stats, outreach events, and deck analysis.

Configure and execute a time series forecasting pipeline using Polars for data manipulation and MLForecast with LightGBM for modeling, applying specific lag features, rolling statistics, and evaluation metrics.