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Data & Analytics
Data analysis, BI, visualization, datasets, statistics, and ML workflows
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- 266 Usage Guide 697cfa22This guide covers creating reproducible Jupyter notebooks with parameterization for automated analysis pipelines.Votes: 0GitHub stars: 9
- 266 Usage Guide 61889911End-to-end workflow for label-free proteomics analysis from MaxQuant/DIA-NN output to differential protein abundance.Votes: 0GitHub stars: 9
- 266 Usage Guide 40d87812End-to-end workflow for biomarker discovery combining feature selection, model training with nested cross-validation, interpretation, and validation. Produces a validated biomarker panel with an accompanying classifier.Votes: 0GitHub stars: 9
- 266 Usage Guide 0d4cfc27Unique Molecular Identifiers (UMIs) are random sequences added to molecules before PCR amplification. They enable distinguishing PCR duplicates from biological duplicates, crucial for accurate quantification in RNA-seq, targeted sequencing, and single-cell applications.Votes: 0GitHub stars: 9
- 215 Name Skill Fc87db77Build weighted gene co-expression networks to identify modules of co-regulated genes and relate them to phenotypes using WGCNA and CEMiTool. Detects hub genes and module-trait relationships from bulk or single-cell expression data. Use when finding co-expression modules, identifying hub genes, or relating gene networks to clinical or experimental variables.Votes: 0GitHub stars: 9
- 215 Name Skill Dfabaa47- Working on business analyst tasks or workflows - Needing guidance, best practices, or checklists for business analystVotes: 0GitHub stars: 9
- 215 Name Skill B49167d6Trace downstream data lineage and impact analysis. Use when the user asks what depends on this data, what breaks if something changes, downstream dependencies, or needs to assess change risk before modifying a table or DAG.Votes: 0GitHub stars: 9
- 215 Name Skill 9086c123End-to-end gene regulatory network inference pipeline from processed single-cell data to regulon discovery and perturbation simulation. Supports RNA-only (pySCENIC) and multiome (SCENIC+) paths. Use when building gene regulatory networks from single-cell transcriptomic or multiome data.Votes: 0GitHub stars: 9
- 215 Name Skill 8d0fda01Assess organization's digital transformation readiness. Evaluate data culture, technology adoption, and process maturity.Votes: 0GitHub stars: 9
- 120 Reference 86ae339bThis reference covers file formats used in microscopy, medical imaging, remote sensing, and scientific image analysis.Votes: 0GitHub stars: 9
- 118 Pyopenms 41005cbePyOpenMS provides specialized tools for untargeted metabolomics analysis including feature detection optimized for small molecules, adduct grouping, compound identification, and integration with metabolomics databases.Votes: 0GitHub stars: 9
- 099 Interactive 5bd7faf4Interactive Mermaid visualization showing chapter organization workflowVotes: 0GitHub stars: 9
- 099 Interactive 45d31604Interactive Mermaid visualization showing faq question pattern analysis workflowVotes: 0GitHub stars: 9
- 099 Interactive 32998d91Interactive Mermaid visualization showing mkdocs build process workflowVotes: 0GitHub stars: 9
- 096 Pathml 20f6fc74PathML provides comprehensive support for loading whole-slide images (WSI) from 160+ proprietary medical imaging formats. The framework abstracts vendor-specific complexities through unified slide classes and interfaces, enabling seamless access to image pyramids, metadata, and regions of interest across different file formats.Votes: 0GitHub stars: 9
- 092 Pathml DfeaeceaPathML provides tools for constructing spatial graphs from tissue images to represent cellular and tissue-level relationships. Graph-based representations enable sophisticated spatial analysis, including neighborhood analysis, cell-cell interaction studies, and graph neural network applications. These graphs capture both morphological features and spatial topology for downstream computational analysis.Votes: 0GitHub stars: 9
- 085 Aeon 556c1766Aeon provides forecasting algorithms for predicting future time series values.Votes: 0GitHub stars: 9
- 079 Feature 726dc77f---Votes: 0GitHub stars: 9
- 074 Reference C625281aThis reference provides patterns and frameworks for designing experiments across scientific domains. Use these patterns to develop rigorous tests for generated hypotheses.Votes: 0GitHub stars: 9
- 061 Reference C89ea468Complete reference for molecular descriptors available in RDKit's `Descriptors` module.Votes: 0GitHub stars: 9
- 048 Document 384be0d9This document covers the fundamental concepts and building blocks of LaminDB: Artifacts, Records, Runs, Transforms, Features, and data lineage tracking.Votes: 0GitHub stars: 9
- 043 Combine A45f3857Combine multiple AnnData objects along either observations or variables axis.Votes: 0GitHub stars: 9
- 031 Gtars 0e4938c5Gtars provides a comprehensive CLI for genomic interval analysis directly from the terminal.Votes: 0GitHub stars: 9
- 026 Drugbank 08006feeDrugBank provides extensive chemical property data including molecular structures, physicochemical properties, and calculated descriptors. This information enables structure-based analysis, similarity searches, and QSAR modeling.Votes: 0GitHub stars: 9