Data & Analytics

Data analysis, BI, visualization, datasets, statistics, and ML workflows

skills in category: 12,625
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Showing 769–792 of 12,625 skills

003 Name Skill 7c91cc03ALoad gene expression count matrices from various formats including CSV, TSV, featureCounts, Salmon, kallisto, and 10X. Use when importing quantification results for downstream analysis.datapythongoVotes: 0GitHub stars: 9
003 Name Skill 7832ca27AInstalls and configures project infrastructure including MkDocs Material intelligent textbook templates, learning graph viewers, and skill tracking systems. Routes to the appropriate installation guide based on what the user needs to set up.datajavascriptgoVotes: 0GitHub stars: 9
003 Name Skill 74be9c92ACompare gene regulatory and co-expression networks between biological conditions to identify rewired regulatory relationships using DiffCorr. Detects gained, lost, and reversed gene-gene correlations between conditions. Use when comparing co-expression networks between disease vs control, treatment conditions, or developmental stages.datapythongoVotes: 0GitHub stars: 9
003 Name Skill 7003fdc2ASql Query Optimizer - Auto-activating skill for Data Analytics. Triggers on: sql query optimizer, sql query optimizer Part of the Data Analytics skill category.datagobashVotes: 0GitHub stars: 9
003 Name Skill 6efdf9e7AAssign GO terms, KEGG orthologs, Pfam domains, and EC numbers to predicted proteins using eggNOG-mapper and InterProScan. Produces functional summaries for downstream pathway and enrichment analysis. Use when adding functional annotation to predicted genes or characterizing protein functions in a new genome.datapythongoVotes: 0GitHub stars: 9
003 Name Skill 6eec1f38AComprehensive spreadsheet creation, editing, and analysis with support for formulas, formatting, data analysis, and visualisation. Use when working with spreadsheets (.xlsx, .xlsm, .csv, .tsv) for creating new spreadsheets with formulas and formatting, reading or analysing data, modifying existing spreadsheets while preserving formulas, data analysis and visualisation, or recalculating formulas.datapythongoVotes: 0GitHub stars: 9
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003 Name Skill 6c8e2911ASimulate transcription factor perturbation effects on cell state using CellOracle, which integrates GRN inference with in silico knockout and overexpression modeling. Predicts cell identity shifts and differentiation trajectory changes from TF perturbations. Use when predicting the effect of transcription factor knockouts, planning perturbation experiments, or identifying driver TFs for cell fate transitions.datapythonbashVotes: 0GitHub stars: 9
003 Name Skill 6ab421a5AToolkit for comprehensive Spreadsheet reading, creation, editing, and analysis with visual quality control. Use to work with spreadsheets (.xlsx, .xlsm, .csv, .tsv) for: (1) Creating new spreadsheets with formulas and formatting, (2) Reading or analyzing tabular data, (3) Modifying existing spreadsheets while preserving formulas, (4) Building financial models with proper formatting, (5) Data visualization with in-sheet charts, or any other spreadsheet tasks.datapythongoVotes: 0GitHub stars: 9
003 Name Skill 66e82c46AAnalyze git repositories to build a security ownership topology (people-to-file), compute bus factor and sensitive-code ownership, and export CSV/JSON for graph databases and visualization. Trigger only when the user explicitly wants a security-oriented ownership or bus-factor analysis grounded in git history (for example: orphaned sensitive code, security maintainers, CODEOWNERS reality checks for risk, sensitive hotspots, or ownership clusters). Do not trigger for general maintainer lists o...datapythongoVotes: 0GitHub stars: 9
003 Name Skill 668c27e8AGuided workflow for statistical and ML analysis of clinical data. Use when planning or executing research analyses on MIMIC, eICU, or similar EHR data. Ensures methodological rigor through structured consultation, assumption checking, and stepwise execution with audit trails.datarustgoVotes: 0GitHub stars: 9
003 Name Skill 64eaa237ADownload sequencing data from NCBI SRA using the SRA toolkit. Use when downloading FASTQ files from SRA accessions, prefetching large datasets, or validating SRA downloads.datapythongoVotes: 0GitHub stars: 9
003 Name Skill 63f73a9eAAnalyzes experimental RNA structure probing data from SHAPE-MaP and DMS-MaPseq experiments using ShapeMapper2. Converts mutation rates to per-nucleotide reactivity profiles that constrain structure prediction. Use when processing SHAPE-MaP or DMS-MaPseq sequencing data to obtain experimental RNA structure information.datapythonbashVotes: 0GitHub stars: 9
003 Name Skill 5f28dab2AAnalyze time-series RNA-seq data using limma voom with splines, maSigPro, and ImpulseDE2. Identify genes with dynamic expression patterns. Use when analyzing time-series or longitudinal expression data.datagoexpressVotes: 0GitHub stars: 9
003 Name Skill 5c1c4e87AAccess and utilize open construction pricing databases. Match BIM elements to standardized work items, calculate costs using public unit price databases with 55,000+ work items.datapythongoVotes: 0GitHub stars: 9
003 Name Skill 5bd8514bAAlpha and beta diversity analysis for microbiome data. Calculate within-sample richness, evenness, and between-sample dissimilarity with phyloseq and vegan. Use when comparing community composition across samples or testing for group differences in microbiome structure.datagotestingVotes: 0GitHub stars: 9
003 Name Skill 5ab3b8d9Awb = Workbook() ws = wb.active ws.title = "Data" ws['A1'] = "Header1" ws['B1'] = "Header2" ws['A1'].font = Font(bold=True, color="FFFFFF") ws['A1'].fill = PatternFill(start_color="333333", end_color="333333", fill_type="solid") wb.save('output.xlsx') ``` </Technology Stack> <External Data in Excel> When creating Excel files with externally fetched data: **Source Citation (MANDATORY):** - ALL external data MUST have source citations in final Excel - **🚨 This applies to ALL external tools**: `...datapythongoVotes: 0GitHub stars: 9
003 Name Skill 5928b06fAWorkflow from differential expression results to functional enrichment analysis. Covers GO, KEGG, Reactome enrichment with clusterProfiler and visualization. Use when taking DE results to pathway enrichment.datagoreactVotes: 0GitHub stars: 9
003 Name Skill 57dced1aAOptimize prefabrication and modular construction workflows. Plan module sequencing, factory scheduling, transportation logistics, and on-site assembly for maximum efficiency.datapythongoVotes: 0GitHub stars: 9
003 Name Skill 577bfb3dACalculates species richness, diversity, and turnover using the Hill number framework with iNEXT coverage-based rarefaction/extrapolation, asymptotic diversity estimation, and beta diversity partitioning (betapart turnover vs nestedness). Compares assemblages using coverage-standardized rather than size-standardized rarefaction. Use when quantifying biodiversity from species abundance or incidence data, comparing diversity across sites, or constructing rarefaction curves. Not for clinical 16S ...datagoVotes: 0GitHub stars: 9
003 Name Skill 5708be57AApply machine learning for construction project risk assessment. Predict schedule delays, cost overruns, and safety incidents using historical data and project characteristics.datapythongoVotes: 0GitHub stars: 9
003 Name Skill 55773a6bAModels continuous temporal trajectories from bulk or time-resolved omics data using generalized additive models (mgcv), spline regression, and changepoint detection (segmented, ruptures). Fits smooth gene expression curves and tests trajectory differences between conditions. Use when fitting non-linear temporal models to bulk time-series data or comparing developmental trajectories across conditions. Not for single-cell pseudotime (see single-cell/trajectory-inference).datapythongoVotes: 0GitHub stars: 9
003 Name Skill 5387b423AMonitor construction progress using computer vision. Analyze site photos and drone imagery to track work completion, detect safety issues, and compare against BIM models.datapythonVotes: 0GitHub stars: 9
003 Name Skill 510e04d3AMarkdown exporter for export Markdown text to DOCX, PPTX, XLSX, PDF, PNG, HTML, IPYNB, MD, CSV, JSON, JSONL, XML files, and extract code blocks in Markdown to Python, Bash,JS and etc files. Also known as the md_exporter skill.datapythonbashVotes: 0GitHub stars: 9
003 Name Skill 452e25ffATrack actual vs planned productivity using CWICR norms. Calculate productivity rates, identify variances, and generate performance reports.datapythongoVotes: 0GitHub stars: 9