Claude Skills by stanfish06

Use for blue-team threat hunting, detection engineering with Sigma/YARA, SIEM query design, and incident detection validation.

Use for authorized OSINT and cyber threat intelligence that enriches IOCs, campaigns, impersonation, scams, or threat actors from public sources. Includes bounded X/Twitter search through Xquik, source preservation, corroboration, and evidence handoff.

Use for authorized wireless security assessment including Wi-Fi capture, WPA handshake analysis, rogue AP detection research, and lab-only deauth testing.

Use for authorized Active Directory and Windows identity attacks including Kerberos, AD CS, BloodHound paths, NTLM relay, and domain privilege escalation research.

Expert-thinking profile for RF / Microwave Engineer (RF/microwave circuit design / S-parameter & EM simulation / VNA bench validation / regulatory masks (FCC, ETSI, 3GPP)): Reasons from power-wave S-parameters, Friis noise-figure cascades, and Rollett/mu stability through ADS/AWR harmonic balance, HFSS/Sonnet EM, Smith-chart matching, and TRL/SOLT-calibrated VNA/spectrum bench work while treating reference- plane errors, LO leakage and IF feedthrough, conditional instability, and...

Run RFDiffusion protein backbone design via NVIDIA NIM. Use for de novo protein backbones, motif scaffolding, binder design, hotspot residues, contigs syntax, diffusion steps, hosted NVIDIA API calls, local Docker deployment, and PDB backbone outputs for ProteinMPNN sequence design.

Risk Analysis Audit skill for Datasite deal rooms. Use this skill whenever a sell-side deal team wants to audit, review, or flag risks across a data room before going live. Triggers include: "run a risk audit", "flag risks in the data room", "risk review", "what are the risks in this deal", "audit the data room", "risk analysis", "flag issues before we go live", "what should we fix before launch", or any request to analyse deal risk by workstream (Tax, Finance, Legal, HR, IP, Commercial, Regu...

Expert-thinking profile for RNA Biologist (mixed molecular RNA biology (wet-lab assay design) and computational transcriptomics): Reasons like a senior RNA biologist across transcription and nascent assays, splicing, m6A, CLIP/eCLIP, RNA-seq, ribosome profiling, and GENCODE/MANE annotation—with rigor, troubleshooting, and reporting norms.

Submit compact RNAcentral API requests for RNA entry browsing, single-entry lookup, and cross-reference retrieval. Use when a user wants concise RNAcentral summaries

Expert-thinking profile for Robotics Engineer (hardware-software integration / manipulation, navigation & perception): Reasons from DH/PoE kinematics, Jacobian singularities, and computed-torque/impedance control through ROS 2, MoveIt/OMPL, Nav2/SLAM/AMCL, hand-eye AX=XB, Isaac/Gazebo sim-to-real, and ISO 10218/ISO TS 15066 safety while treating tf/frame errors, encoder drift, backlash, and reality-gap overclaim as first-class failure...

Expert-thinking profile for Robotics Scientist (hardware validation / kinematics & dynamics / planning & control (MPC, WBC) / SLAM & perception / sim-to-real / safety (ISO 10218, ISO/TS...): Reasons from the closed sensor-to-actuator loop, kinematic reachability, and dynamic feasibility (friction cones, actuator saturation) through DH/PoE kinematics, RRT*/CHOMP planning, MPC and whole-body control, SLAM, and ROS 2 rosbag logging while treating TF-frame and timestamp mismatches, the sim-to-rea...

Guide for using Apollo Rover CLI to manage GraphQL schemas and federation. Use this skill when: (1) publishing or fetching subgraph/graph schemas, (2) composing supergraph schemas locally or via GraphOS, (3) running local supergraph development with rover dev, (4) validating schemas with check and lint commands, (5) configuring Rover authentication and environment, (6) exploring or searching a graph's schema for agent-driven discovery (rover schema describe / rover schema search).

Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa and macropKa prediction, conformer and tautomer ensembles, docking and analogue docking, protein-ligand cofolding, MSA generation, molecular dynamics, permeability, descriptor workflows, and related small-molecule or protein modeling tasks. Ideal for programmatic batch screening, multi-step chemistry pipelines, and workflows that would otherwise require maintaining local HPC/GPU...

Recommend or run the exact `dotnet test` command. Use when the user asks to run, filter, or troubleshoot .NET tests or wants the precise command, flags, or argument order — the right syntax depends on the test platform (VSTest vs Microsoft.Testing.Platform) and SDK version and is easy to get wrong from memory. USE FOR: running all tests or a subset (a specific class, category, or trait) via filters; a single framework in a multi-TFM project (`--framework`); TRX reports; crash or hang dumps; w...

Formats and executes dbt CLI commands, selects the correct dbt executable, and structures command parameters. Use when running models, tests, builds, compiles, or show queries via dbt CLI. Use when unsure which dbt executable to use or how to format command parameters.

Build sandboxed applications for secure code execution. Load when building AI code execution, code interpreters, CI/CD systems, interactive dev environments, or executing untrusted code. Covers Sandbox SDK lifecycle, commands, files, code interpreter, and preview URLs. Biases towards retrieval from Cloudflare docs over pre-trained knowledge.

Dispatcher for the K-Dense scientific-agents collection. Use when you need to choose among imported scientific and engineering expert profiles, such as bioinformatician, clinical epidemiologist, materials scientist, astrophysicist, or machine-learning researcher.

Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE, Cochrane ROB), for critical analysis of scientific claims.

Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design templates, timing guidance, and visual validation. Works with PowerPoint and LaTeX Beamer.

Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.

A collection of algorithms for image processing in Python. Built on NumPy, SciPy, and Cython. It focuses on scientific image analysis including segmentation, geometric transformations, color space manipulation, analysis, and filtering.

Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model evaluation, hyperparameter tuning, preprocessing, or building ML pipelines. Provides comprehensive reference documentation for algorithms, preprocessing techniques, pipelines, and best practices.

Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill when working with censored survival data, performing time-to-event analysis, fitting Cox models, Random Survival Forests, Gradient Boosting models, or Survival SVMs, evaluating survival predictions with concordance index or Brier score, handling competing risks, or implementing any survival analysis workflow with the scikit-survival library.

Single-cell immune receptor analysis with Scirpy for scanpy, anndata, and scvi-tools projects. Use for TCR/BCR V(D)J import, clonotype definition, clonal expansion, repertoire overlap, immune receptor QC, MuData/AnnData integration, and Scanpy-linked immune repertoire visualization.

Use when the user's host screen must be captured — the full desktop, one monitor, or a pixel region — or when a screen capture needs cropping, resizing, rotation, flipping, format conversion (png/jpeg/webp), quality control, or filters/enhancement; also when you need to enumerate connected monitors and their geometry. Not for browser-page screenshots (use claude-in-chrome).

Local Scanpy pipeline for single-cell RNA-seq QC, optional doublet detection, clustering, marker discovery, optional

Standard scRNA-seq preprocessing and clustering with Scanpy. Use for QC, normalization, HVG selection, PCA, neighbor graph construction, UMAP, Leiden clustering, and export of an analysis-ready AnnData object.

Process, quality-control, annotate, and visualize single-cell or single-nucleus RNA-seq datasets across tissues and species. Use when Codex needs to build, adapt, or review a general scRNA-seq QC pipeline; choose dataset-appropriate cell-level filters from QC distributions; run required scDblFinder-based doublet and ambient-RNA filtering; annotate cells with matched references or marker-based fallbacks; or generate global and per-group UMAP visualizations for large scRNA-seq datasets.

Design and implement parallax scrolling and scrollytelling data visualizations. Use when the user asks for parallax scrolling, scrollytelling, scroll-driven timelines, sticky graphics, Scrollama, ScrollTrigger, ScrollTimeline, view timelines, rich-media timelines, moviescrollers, scroll-scrubbed charts, staged narrative reveals, or interactive visual stories where scrolling changes a data visualization or media scene.

RNA velocity analysis with scVelo. Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajectory directions, compute latent time, and identify driver genes in single-cell RNA-seq data. Complements Scanpy/scVI-tools for trajectory inference.

Deep generative models for single-cell omics. Use when you need probabilistic batch correction (scVI), transfer learning, differential expression with uncertainty, or multi-modal integration (TOTALVI, MultiVI). Best for advanced modeling, batch effects, multimodal data. For standard analysis pipelines use scanpy.

SEC (size-exclusion chromatography) analysis with peak detection, oligomer classification, and publication-quality PDF report generation via Typst templates. Triggers on "SEC", "size exclusion", "chromatography", "oligomer analysis", "protein assembly", "SEC report".

Hardens code against vulnerabilities. Use when handling user input, authentication, data storage, or external integrations. Use when building any feature that accepts untrusted data, manages user sessions, or interacts with third-party services.

Use when the user asks for a security review of a pull request, commit, branch diff, working-tree patch, or other Git-backed change set.

Use for a standard, single-pass security audit of an entire repository or a scoped path, package folder, or submodule with no diff to review. This is the default repository scan. Do not use for PR/commit/branch/working-tree diffs, or for deep, multi-pass, or variance-reducing scans.

Expert-thinking profile for Sedimentologist (field logging / facies analysis / granulometry & petrography / core-log-seismic integration / reservoir quality): Reasons from grain-scale hydraulics, facies associations, and base-level accommodation through measured sections, Folk & Ward granulometry, Bouma divisions, ichnofacies, and core-log-seismic ties while treating diagenetic overprint, bioturbation-destroyed laminae, fining-upward and shale-equals-deep-water defaults...

Expert-thinking profile for Seismologist (observational / computational / operational seismology): Reasons from elastic wave theory and Earth models through detection, HypoDD/iLoc location, moment tensors, ambient-noise and receiver-function imaging, PSHA/OpenQuake hazard, and NEIC-style operational products (ShakeMap, PAGER, EEW) with explicit artifact and magnitude-type discipline.

Expert-thinking profile for Semiconductor Device Engineer (device characterization / TCAD-to-silicon calibration / compact modeling (BSIM-CMG) / wafer-level reliability (NBTI/HCI/TDDB) / FinFET-GAA): Reasons from electrostatics, capacitance-current MOSFET physics, interface-trap behavior, and self-heating through I-V/C-V extraction ladders, Sentaurus TCAD calibrated to silicon splits, BSIM-CMG compact modeling, and JEDEC reliability stress while treating uncalibrated TCAD, unstated constant-c...

Expert-thinking profile for Semiconductor Materials Scientist (bulk & epitaxial growth / defect & transport characterization): Reasons from band structure, defect energetics, and process–structure–property links; grows and characterizes bulk and epitaxial semiconductors (Si, III–V, SiC, GaN, 2D) via MOCVD/MBE/HVPE, Hall/DLTS/XRD/RSM/ECCI/TEM/SIMS, and DFT defect levels while treating compensation, Fermi-level pinning, threading dislocations...

Expert-thinking profile for Semiconductor Physicist (theory / transport & defect spectroscopy / heterostructures): Reasons from ε_n(k), effective-mass tensor, and 2D subband DOS through Hall/multiband fits, mobility scattering analysis, Lang DLTS (E_T, σ, N_T), and quantum-well intersubband spectroscopy while treating compensation, rate- window artifacts, and DFT gap error as first-class failure modes.

Expert-thinking profile for Sensor Engineer (MEMS / optical / instrumentation design and characterization): Reasons from transduction physics and error budgets through MEMS IMU Allan variance (ARW, bias instability, rate random walk), six-position and temperature calibration, piezoresistive/capacitive pressure validation, and photodiode–TIA NEP/SNR while treating vibration rectification, mag distortion, and aliased...

Expert-thinking profile for Separation Processes Engineer (process simulation / pilot plant / plant troubleshooting): Reasons from VLE/LLE thermodynamics, FUG shortcuts, and NRTL/PR property packages through Aspen RadFrac, CGCC/pinch integration, membrane Robeson bounds, chromatography van Deemter scale-up, and MSZW crystallization while treating wrong BIPs, jet flood/entrainment, concentration polarization, and lab-to- plant MSZW as...

Analyze DNA/RNA/protein sequences. Use when the user provides a sequence and asks for analysis, translation, GC content, ORFs, motifs, restriction sites, or primer design. Triggers on "sequence", "translate", "GC content", "ORF", "primer", "restriction", "complement", "reverse complement".

Install a .NET SDK locally for safe preview testing, specific-version pinning, or reproducible team setups — without modifying the system-wide installation. USE FOR: trying .NET previews safely, testing specific SDK versions, installing MAUI or other workloads on a preview, updating or replacing an existing local SDK, creating reproducible team/CI install scripts, configuring global.json paths. DO NOT USE FOR: system-wide SDK installs, .NET hosts older than 10, runtime-only installs, or proje...

Configure this repo for the engineering skills: set up its issue tracker, triage label vocabulary, and domain doc layout. Run once before first use of the other engineering skills.

Set up Husky pre-commit hooks with lint-staged (Prettier), type checking, and tests in the current repo. Use when user wants to add pre-commit hooks, set up Husky, configure lint-staged, or add commit-time formatting/typechecking/testing.

Wire dependency-cruiser into a TypeScript repo so each package is a deep module, with implementation hidden in subfolders and reachable only through its entry-point files. User-invoked.

Use when setting up OAuth.

Verify Daloopa MCP connection and show available skills

Single-cell RNA-seq analysis in R with Seurat v5 — QC, normalization (LogNormalize or SCTransform), dimensionality reduction, clustering, marker detection, integration of multiple samples, and interconversion with AnnData/scanpy. Use when single-cell work must stay in R/Bioconductor, when collaborators expect a Seurat object, or when following an R-based tutorial. For Python single-cell workflows use scanpy/anndata instead.