All authors
Claude Skills by stanfish06
github.com/stanfish061,773 skills143 installs3,463 views
- Open NotebookSelf-hosted, open-source alternative to Google NotebookLM for AI-powered research and document analysis. Use when organizing research materials into notebooks, ingesting diverse content sources (PDFs, videos, audio, web pages, Office documents), generating AI-powered notes and summaries, creating multi-speaker podcasts from research, chatting with documents using context-aware AI, searching across materials with full-text and vector search, or running custom content transformations. Supports ...Votes: 0GitHub stars: 8
- Openai Ads Conversions SetupGuide Codex through instrumenting or extending repositories with OpenAI Ads Measurement Pixel and optional Conversions API (CAPI). Use when adding Ads conversion tracking, browser pixel events, server-side conversion events, event_id deduplication, CAPI secret placeholders, incremental conversion coverage, or validating Ads conversion setup. Applies to local repositories and PR review contexts; prioritize safe, reviewable diffs and never place API keys or secrets in source code or client bund...Votes: 0GitHub stars: 8
- Openai Platform Api KeyUse when Codex is asked to build, run, test, debug, or configure an OpenAI-backed or provider-unspecified AI app, UI, script, CLI, generator, or tool, especially requests phrased only as "using AI" or generators driven by forms/user input; also use for OPENAI_API_KEY or sk-proj setup. Treat this as the credential gate: inspect safely, ask reuse-vs-new before API work, and never expose plaintext.Votes: 0GitHub stars: 8
- Openfold2 NimUse this skill for OpenFold2, NVIDIA's BioNeMo NIM microservice for monomer protein structure prediction. Invoke whenever the user mentions OpenFold2, AlphaFold2-like monomer folding, protein sequence-to-structure prediction, A3M MSAs, mmCIF templates, hosted NVIDIA API calls, or local Docker deployment.Votes: 0GitHub stars: 8
- Openfold3 NimUse this skill for OpenFold3, NVIDIA's BioNeMo NIM microservice for biomolecular structure prediction. Invoke whenever the user mentions OpenFold3 or needs protein, protein-ligand, protein-DNA/RNA, or multi-chain complex prediction with the hosted NVIDIA API or local Docker NIM. Covers endpoint choice, auth, request payloads, output artifacts, confidence scores, and local container setup.Votes: 0GitHub stars: 8
- OpensrcGive coding agents the actual source code of any dependency. `opensrc path <pkg>` shallow-clones a package at the right version and caches it locally, printing a path you can grep/read — for npm, PyPI, crates.io, and GitHub/GitLab/Bitbucket repos. Use when you need to read a library's real implementation (not just docs) to understand internals, verify behavior, find an undocumented API, debug a dependency, or check what changed between versions. Compose with ripgrep/cat/find.Votes: 0GitHub stars: 8
- OpentelemetryInstrument any app with OpenTelemetry and ship metrics / logs / traces to Grafana Cloud or self-hosted Mimir / Loki / Tempo / Pyroscope. Covers SDK auto-instrumentation for Go, Java (Grafana JVM agent), Python (`opentelemetry-instrument`), Node.js, .NET (`Grafana.OpenTelemetry`), Beyla eBPF for zero-code; Grafana Cloud OTLP gateway + Basic-auth (instanceID + API key, base64); env-var config (`OTEL_EXPORTER_OTLP_*`, `OTEL_RESOURCE_ATTRIBUTES`); Alloy / OTel-Collector pipelines; Kubernetes Oper...Votes: 0GitHub stars: 8
- Opentrons IntegrationOfficial Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardware with full access to Protocol API v2 features. Best for production Opentrons protocols, official API compatibility. For multi-vendor automation or broader equipment control use pylabrobot.Votes: 0GitHub stars: 8
- Operations ResearcherExpert-thinking profile for Operations Researcher (optimization modeling / stochastic & robust programming / discrete-event simulation / VRP & scheduling / production solve ops (ERP/WMS/TMS)): Reasons from decision structure, integrality and convexity, and explicit uncertainty through LP/MIP solvers (Gurobi, CPLEX, OR-Tools CP-SAT), stochastic and Wasserstein-distributionally-robust formulations, and DES (SimPy, AnyLogic) benchmarked on Solomon/MIPLIB instances, while treating unit inconsiste...Votes: 0GitHub stars: 8
- OphthalmologistExpert-thinking profile for Ophthalmologist (clinical / retina, glaucoma & vision trials): Reasons from structure–function pairing (OCT RNFL/CST, HVF MD/VFI, ETDRS BCVA); manages glaucoma IOP targets and anti-VEGF treat-and-extend while treating field learning effect, OCT floor effect, and 15-letter regulatory margins as first- class failure modes.Votes: 0GitHub stars: 8
- Optical PhysicistExpert-thinking profile for Optical Physicist (ultracold AMO / laser cooling & trapping / optical lattices & tweezers / precision clocks / quantum simulation): Reasons from quantized atom-field coupling, recoil and trap energy scales (Γ, E_rec, U/J, κ), and coupled instability-versus-systematic budgets through optical Bloch equations, in-situ lattice-depth and Rabi calibration, QuTiP and ARC modeling, and Allan-deviation and clock systematic tables, while treating...Votes: 0GitHub stars: 8
- Optimization ScientistExpert-thinking profile for Optimization Scientist (computational / mathematical optimization): Reasons from convexity class, KKT/complementarity, and LP/MIP relaxation gaps through interior-point and branch-and-cut (Gurobi, CPLEX, MOSEK, Ipopt) while treating loose big-M, IntegralityTol cheaters, IIS-hidden infeasibility, nonconvex KKT-as-global, and MIPGap-at-TimeLimit-as-optimal as first-class failure modes.Votes: 0GitHub stars: 8
- Optoelectronics EngineerExpert-thinking profile for Optoelectronics Engineer (device R&D / characterization / PIC & semiconductor photonics): Reasons from photon–electron conversion, ABC recombination, and IQE/EQE/WPE budgets; runs LIV/pulsed laser, EMVA 1288, and responsivity metrology; designs with Lumerical/Sentaurus/COMSOL TCAD and foundry PDKs while treating efficiency droop, thermal rollover, LIV kinks, and calibration geometry as first-class failure...Votes: 0GitHub stars: 8
- OptunaHyperparameter optimization (HPO) for ML models using Optuna. Use when tuning learning rate, regularization, architecture choices, or any numeric/categorical hyperparameter. Covers create_study/optimize quickstart, sampler selection (TPE, CMA-ES, grid, random, NSGA-II), pruners for early stopping (MedianPruner, HyperbandPruner), distributed search with RDBStorage, integrations with PyTorch Lightning and scikit-learn, and built-in visualization.Votes: 0GitHub stars: 8
- Oral BiologistExpert-thinking profile for Oral Biologist (clinical / research): Reasons from biofilm dysbiosis, demineralization-remineralization balance, and host-mineral-microbe partitioning through pH-cycling and ligature models, 16S/shotgun metagenomics (DADA2/QIIME2, HOMD), micro-CT, and ICDAS/AAP-EFP staging, while treating saliva- ignored caries models, low-biomass contamination...Votes: 0GitHub stars: 8
- Organic ChemistExpert-thinking profile for Organic Chemist (wet-lab / synthetic and methods organic chemistry): Reasons from retrosynthesis, protecting-group strategy, and stereoelectronics; executes air-sensitive chemistry, flash/LC-MS purification, and NMR/IR/MS proof; mines SciFinder/Reaxys and reports ACS-grade experimentals with E-factor/PMI and pyrophoric safety discipline.Votes: 0GitHub stars: 8
- Organoid BiologistExpert-thinking profile for Organoid Biologist (wet-lab / stem-cell and 3D epithelial culture): Reasons from niche signaling, Matrigel scaffolds, and culture geometry; engineers Wnt/R-spondin expansion, ALI differentiation, and PDO biobanks while treating matrix lot effects and donor-level pseudoreplication as first-class failure modes.Votes: 0GitHub stars: 8
- Organometallic ChemistExpert-thinking profile for Organometallic Chemist (air-sensitive synthesis / homogeneous catalysis / multinuclear NMR & SCXRD / mechanistic kinetics): Reasons from electron counting, oxidation states, and elementary catalytic steps through Schlenk/glovebox technique, multinuclear NMR and νCO IR, SCXRD with checkCIF, and TON/TOF kinetics while treating air oxidation to oxo/hydroxo species, paramagnetic line-broadening, and trace or colloidal-metal leaching as...Votes: 0GitHub stars: 8
- OrnithologistExpert-thinking profile for Ornithologist (field / observational / banding / bioacoustics / population monitoring): Reasons from detectability-limited surveys through BBS/MAPS protocols, distance sampling and unmarked occupancy, eBird/auk hygiene, BirdNET–Raven validation, BBL permitting, Pyle molt scoring, MOTUS/FlightR connectivity, and AviList/Clements taxonomy while treating roadside bias, space-for- time pseudo-replicates, and...Votes: 0GitHub stars: 8
- Orthopedic BiomechanistExpert-thinking profile for Orthopedic Biomechanist (clinical / research): Reasons from joint kinematics, forces, moments, and tissue stress through optical motion capture with force plates, inverse dynamics with de Leva segment parameters, OpenSim/AnyBody and FEBio/Abaqus models, and ISO 14243 wear testing while treating skin motion artifact, cardan gimbal lock, unnormalized moments, and...Votes: 0GitHub stars: 8
- Ot IcsUse for authorized OT/ICS security assessment covering Purdue model zoning, PLC/SCADA exposure, industrial protocol discovery, and safe passive-first evaluation.Votes: 0GitHub stars: 8
- Packaging NotarizationPrepare macOS packaging and notarization workflows. Use when archiving apps, validating bundles, or explaining distribution-only failures.Votes: 0GitHub stars: 8
- PacsomaticOperator toolkit for nf-core/pacsomatic matched tumor-normal workflows from BAM inputs. Use this skill when the user needs to validate run inputs, generate pacsomatic-compliant samplesheets, prepare reproducible Nextflow launch artifacts, run locally or submit to schedulers (LSF/Slurm/PBS/SGE), and triage execution failures. Triggers on requests to run pacsomatic, prepare launch commands/scripts, perform dry-run checks, or troubleshoot pipeline startup and scheduler submission errors.Votes: 0GitHub stars: 8
- PaleobotanistExpert-thinking profile for Paleobotanist (field / laboratory paleobotany & palynology): Reasons from phytotaphonomy and preservation mode (compression, permineralization, palynomorphs); prepares coal-ball peels and cuticle/maceral workflows; applies LMA/CLAMP/DiLP and stomatal/Franks CO₂ proxies; uses PBDB, Neotoma, IFPNI/PFNR, and ICN fossil-taxon nomenclature while treating transport bias...Votes: 0GitHub stars: 8
- PaleoceanographerExpert-thinking profile for Paleoceanographer (field / observational marine paleoceanography): Reasons from foraminiferal proxy system science (G. ruber, Cibicidoides, species/size fraction), Barker Mg/Ca cleaning and Anand/Gray calibrations, paired planktic δ¹⁸O–Mg/Ca and LR04 benthic stacks, IODP depth scales and splice ties, and AMOC fingerprints (benthic δ¹³C gradients, εNd, ²³¹Pa/²³⁰Th, sortable silt)...Votes: 0GitHub stars: 8
- PaleoclimatologistExpert-thinking profile for Paleoclimatologist (proxy reconstruction / chronology & age modeling / spectral & cyclostratigraphy / model-data comparison (PMIP, DeepMIP)): Reasons from proxy transfer functions, archive integration time, and orbital forcing through Bayesian age-depth modeling (Bacon, OxCal), IntCal20 radiocarbon calibration, PAGES2k compositing, and proxy-equivalent PMIP/DeepMIP comparison while treating age- model uncertainty, non-stationary calibration (CO2...Votes: 0GitHub stars: 8
- PaleontologistExpert-thinking profile for Paleontologist (field / museum / computational): Reason from **taphonomic filters** first: biostratinomy, diagenesis, time-averaging, and Signor–Lipps before biostratigraphic correlation, morphometrics, or phylogenetic claims.Votes: 0GitHub stars: 8
- Palliative Care ResearcherExpert-thinking profile for Palliative Care Researcher (clinical trials / symptom science / patient-reported outcomes / health services / reporting (CONSORT-PRO, SPIRIT, PCORI)): Reasons from serious-illness trajectories, multidimensional symptom burden, goals-of-care concordance, and caregiver dyad outcomes through validated PROMs (ESAS-r, IPOS, FACIT-Pal), prespecified MCID responder analysis, mixed-effects and joint survival-QoL models, and CONSORT-PRO/SPIRIT/PCORI reporting while treating...Votes: 0GitHub stars: 8
- PandasThe workhorse library for in-memory tabular data in Python. Use for loading, cleaning, reshaping, joining, grouping, and analyzing labeled row/column data. Trigger terms include "pandas", "dataframe", "series", "csv", "parquet", "tabular data", "groupby", "pivot", "merge", "data wrangling", "data cleaning". Covers pandas 2.x and the 3.0 changes (Copy-on-Write, default string dtype, PyArrow-backed dtypes).Votes: 0GitHub stars: 8
- Pandera ValidationDataFrame schema validation using pandera. Schema definitions, column checks, and decorator-based validation.Votes: 0GitHub stars: 8
- Paper 2 WebUse when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference posters (Paper2Poster). Use this skill for tasks involving paper dissemination, conference preparation, creating explorable academic homepages, generating video abstracts, or producing print-ready posters from LaTeX or PDF sources.Votes: 0GitHub stars: 8
- ParabricksRoute NVIDIA Parabricks pbrun tools, assess GPU/runtime readiness, and provide version-aware command guidance for FASTQ/BAM processing, RNA-seq, variant calling, BAM QC, and GVCF workflows. Do NOT use for inspecting or accelerating whole pipelines — use genomics-workflow-acceleration.Votes: 0GitHub stars: 8
- Parallel WebSearch the web, extract URL content, enrich datasets, and run deep research using parallel-cli, prioritizing academic and scientific sources. Use for ANY web-related task: looking things up, fetching pages or academic PDFs, bulk data enrichment, and exhaustive multi-source research reports — even when the user doesn't mention 'parallel' or 'web' explicitly.Votes: 0GitHub stars: 8
- ParasitologistExpert-thinking profile for Parasitologist (field / laboratory parasitology + public- health surveillance): Reasons from parasite life cycles, WHO NTD program logic, and diagnostic performance (Kato-Katz, qPCR/MIQE, RDTs); troubleshoots microscopy artifacts, MDA surveillance, and anthelmintic resistance.Votes: 0GitHub stars: 8
- ParaviewParaView scientific visualization for volume data and meshes. Use this skill when Claude needs to: (1) Visualize 3D volume data (CT, MRI, scientific simulations), (2) Create isosurfaces, slices, volume renderings, (3) Visualize vector fields with streamlines/glyphs, (4) Generate publication-quality screenshots, (5) Work with VTK, EXODUS, RAW, or other scientific data formatsVotes: 0GitHub stars: 8
- Particle PhysicistExpert-thinking profile for Particle Physicist (experimental / phenomenological high- energy physics): Reasons from SM gauge structure, parton PDFs, and detector response through ATLAS/CMS/LHCb/Belle II/DUNE workflows, Geant4+Pythia/MG5 simulation, HistFactory/Combine/pyhf likelihoods, and HEPData/Rivet preservation while treating LEE/global significance, JES/pile-up, fake leptons, and flux×cross-section systematics as...Votes: 0GitHub stars: 8
- Patch Diff ExploitN-day 补丁差分到利用。从厂商发布的补丁里反推漏洞点、写 PoC、做成可用的攻击模块。 适用场景：已知 CVE 编号但只有补丁没有 PoC、SRC/红队需要打击未及时更新的资产、N-day 武器化、Patch Tuesday 跟进。 核心方法：拿 before/after 二进制 → 对齐符号 → 二进制 diff → 看新增的安全检查反推 bug class → 写 PoC 触发漏洞。 触发关键词：N-day、Nday、补丁差分、patch diff、patch tuesday、1day、binary diff 漏洞、bindiff 利用、ghidriff、Diaphora、补丁分析、CVE 复现、漏洞还原、补丁反推、N-day 武器化。Votes: 0GitHub stars: 8
- PathmlFull-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed immunofluorescence (CODEX, Vectra), nucleus segmentation, tissue graph construction, and ML model training on pathology data. Supports 160+ slide formats. For simple tile extraction from H&E slides, histolab may be simpler.Votes: 0GitHub stars: 8
- PathologistExpert-thinking profile for Pathologist (clinical / research): Reasons from H&E morphology, pretest-probability differentials, and pre-analytic integrity through CAP synoptic protocols, staged IHC and FISH panels, WHO/AJCC grading and staging, and Bethesda/Paris/Milan cytology systems while treating crush artifact, fixation/decalcification failure, single-frozen-section overcall...Votes: 0GitHub stars: 8
- Pathway EnricherGene-set pathway enrichment analysis using Enrichr — queries KEGG, GO (BP/MF/CC), Reactome, WikiPathways, MSigDB, and Disease Ontology. Produces ranked pathway tables, interactive bubble charts, and a reproducible Markdown report.Votes: 0GitHub stars: 8
- Pavement EngineerExpert-thinking profile for Pavement Engineer (mechanistic-empirical design / flexible & rigid pavements / NDE & forensics / asset management (MEPDG, FWD)): Reasons from layered-elastic stress/strain, traffic spectra, climate, and material temperature- dependence through AASHTOWare Pavement ME (MEPDG) hierarchical inputs, FWD deflection- basin backcalculation with GPR/core thickness, binder PG selection, and LTPP- calibrated transfer functions, while treating mis-specified...Votes: 0GitHub stars: 8
- PedologistExpert-thinking profile for Pedologist (soil survey / pedon morphology / classification (USDA Taxonomy, WRB) / micromorphology / digital soil mapping): Reasons from CLORPT factors, genetic horizons, and catenary position through the USDA Field Book, Soil Taxonomy and WRB 2022 keys, XRD clay mineralogy, micromorphology, and NASIS/SSURGO correlation while treating colluvial-versus-illuvial Bt confusion, lithologic discontinuities, surface-color-alone drainage calls...Votes: 0GitHub stars: 8
- Peer ReviewSystematic peer review toolkit. Evaluate methodology, statistics, design, reproducibility, ethics, figure integrity, reporting standards, for manuscript and grant review across disciplines.Votes: 0GitHub stars: 8
- PennylaneHardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients, building hybrid quantum-classical models, or needing device portability across IBM/Google/Rigetti/IonQ. Best for variational algorithms (VQE, QAOA), quantum neural networks, and integration with PyTorch or JAX. For hardware-specific optimizations use qiskit (IBM) or cirq (Google); for open quantum systems use qutip.Votes: 0GitHub stars: 8
- Pentest Tools主动渗透测试工具链。覆盖信息收集、端口扫描、漏洞扫描、Web 渗透、SQL 注入、目录爆破、密码破解等场景。 通过 MCP server（pentestMCP / mcp-security-hub）将 20+ 安全工具暴露给 AI agent。 触发关键词：渗透测试、端口扫描、Nmap、漏洞扫描、Nuclei、SQL 注入、SQLMap、目录爆破、FFUF、密码破解、Hashcat、信息收集、子域名、Web 渗透、ZAP、Burp。Votes: 0GitHub stars: 8
- Src Hunter实战 SRC / 众测 / Bug bounty 漏洞挖掘工作流 skill。包含：5 阶段方法论（intake → recon → enum → hunt → report）、19 个攻击类 playbook（SQLi/XSS/RCE/SSRF/IDOR/CSRF/Path Traversal/File Upload/SSTI/XXE/Race/HTTP Smuggling/OAuth/JWT/SAML/GraphQL/Mobile/LLM/DoS）、305 个结构化 payload、263 个 WAF/EDR 绕过变体、2887 份 HackerOne 真实 High/Critical 已披露案例、77,000+ WooYun 案例统计、国产 OA / 中间件指纹库、银行 / 电信行业垂直 playbook。当用户提到 "src 挖洞 / src 漏洞挖掘 / bug bounty / 众测 / hackerone / 漏洞赏金 / SRC / 任意 X 漏洞 / 渗透测试" 或问"如何挖某个目标 / 怎么测某个 API / 如何绕过 WAF" 时触发。Votes: 0GitHub stars: 8
- PetrochemistExpert-thinking profile for Petrochemist (refinery process chemistry / crude assay / fuels & lubricants spec testing / catalyst performance / standards (ASTM D02, EN 228/590)): Reasons from boiling range, hydrocarbon class, sulfur/nitrogen speciation, and octane/cetane drivers through SimDist and PIONA/SARA group-type analysis, CFR- engine RON/MON and cetane testing, refinery LP models, and ASTM/EN spec methods, while treating light-ends loss, assay mismatch versus plant yields, catalyst...Votes: 0GitHub stars: 8
- Petroleum GeologistExpert-thinking profile for Petroleum Geologist (exploration / appraisal / development geoscience): Reasons from petroleum-system elements (kerogen I–IV, kitchens, critical moment), trap/spill-point and SGR fault seal, AVO/DHI and inversion QC, Archie/Simandoux/NMR petrophysics with Monte Carlo STOIIP, and PetroMod 1D–3D charge migration; treats tuning flat spots, post-trap charge, and uncorrected Archie Sw as...Votes: 0GitHub stars: 8
- Petroleum Reservoir EngineerExpert-thinking profile for Petroleum / Reservoir Engineer (field development / dynamic subsurface (MBE, PTA, simulation, reserves)): Reasons from Darcy flow, Havlena–Odeh MBE, Fetkovich/VEH aquifers, Horner/derivative PTA, Buckley–Leverett/Welge floods, Eclipse/CMG/tNavigator history match, PRMS/SEC reserves (P90/P50/P10), and SPE11 CO₂ benchmarks; treats transient Arps b>1, negative-skin grid artifacts, and microseismic≠SRV as first-class failure...Votes: 0GitHub stars: 8
- PetrologistExpert-thinking profile for Petrologist (igneous/metamorphic petrology / petrography / EPMA-LA-ICP-MS microanalysis / thermodynamic modeling (Perple_X, THERMOCALC, MELTS)...): Reasons from Gibbs free energy minimization, the phase rule, and protolith-specific facies assemblages through petrography, EPMA/LA-ICP-MS microanalysis, pseudosections (Perple_X, THERMOCALC, MELTS), and classical thermobarometry while treating retrograde overprinting, serpentinization, propylitic alteration mimicking...Votes: 0GitHub stars: 8