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Claude Skills by pemsley
github.com/pemsley14 skills0 installs36 views
- CodingWhen working with the Coot developer, focus on debugging and fixing issues, not workaroundsVotes: 0GitHub stars: 168
- NCSNCS Reference GuidanceVotes: 0GitHub stars: 168
- Best PracticesBest Practices for using Coot MCPVotes: 0GitHub stars: 168
- BlobsHow to handle Unmodelled Density BlobsVotes: 0GitHub stars: 168
- CorrelationsUsing Density-Fit Correlations in CootVotes: 0GitHub stars: 168
- Essential ApiAPI documentation to be loaded at startup - when starting a Coot session, immediately call get_function_descriptions() with the functions listed in this skill.Votes: 0GitHub stars: 168
- Figure MakingBest practices for creating publication-quality molecular graphics figures in Coot using user-defined colors, ribbons, and molecular representationsVotes: 0GitHub stars: 168
- Inline GraphsCreate interactive inline Chart.js graphs directly in the chat from live Coot data. Use this skill whenever the user asks to plot, graph, chart, or visualise any per-residue data from Coot — B-factors, density correlations, Ramachandran probabilities, rotamer scores, or any other per-residue metric. Also use when the user asks to overlay secondary structure on a graph, or to compare metrics across chains. Prefer this approach over any file-based graphing (e.g. Pygal) — it is faster, interacti...Votes: 0GitHub stars: 168
- Model BuildingBest Practices for Model-Building Tools and RefinementVotes: 0GitHub stars: 168
- Pdbe ApiQuery the PDBe (Protein Data Bank in Europe) REST API and Solr search API from within Coot to access structure metadata, validation data, revision history, search capabilities, and download coordinate filesVotes: 0GitHub stars: 168
- RdkitRDKit molecular manipulation and visualization within Coot's Python environment. Use when working with Coot and need to (1) Create RDKit molecules from Coot monomers, (2) Modify molecular structures (e.g., atom substitution), (3) Generate 2D chemical structure diagrams, (4) Perform cheminformatics operations on ligands or small molecules loaded in Coot.Votes: 0GitHub stars: 168
- RefinementBest practices for protein structure refinement and validation in Coot. Use when performing (1) Residue refinement operations, (2) Model building and fitting, (3) Rotamer fixing, (4) Scripted/automated refinement workflows, (5) Validation and correlation checking.Votes: 0GitHub stars: 168
- ValidationComprehensive structure validation combining model-to-map analysis and unmodeled density detectionVotes: 0GitHub stars: 168
- CodingC++ documentation style conventions for Coot codebaseVotes: 0GitHub stars: 168