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Claude Skills by Manoj-11-Dahal
github.com/Manoj-11-Dahal15,860 skills0 installs0 views
- Omics Data Proteomics Search Space Closeout Handoff LedgerUse when a proteomics search-space provenance work item is nearing completion, pause, or transfer to another owner to produce a closeout ledger for the search-space configuration record with status, evidence, owner, and retention state. Success means all deliverables, unresolved items, approvals, and next owners are recorded, and the stop reason is explicit; the search can be reproduced against the exact database and parameter set. Use configured search, fetch, read, browser, test, and write ...Votes: 0GitHub stars: 2
- Omics Data Proteomics Search Space Completeness ReconciliationUse when the proteomics search-space provenance workflow receives records that must agree across sources, periods, or statuses to produce a reconciliation worksheet for the search-space configuration record with matched, unmatched, and unresolved rows. Success means counts and key fields reconcile or every variance is quantified, sourced, and left unresolved for an owner; the search can be reproduced against the exact database and parameter set. Use configured search, fetch, read, browser, te...Votes: 0GitHub stars: 2
- Omics Data Proteomics Search Space Exception Triage QueueUse when the proteomics search-space provenance workflow has exceptions, missing evidence, or competing priorities to produce a prioritized exception queue for the search-space configuration record with evidence, owner, and next action. Success means every exception has a severity rationale, source, owner or explicit unassigned state, and a bounded next step; the search can be reproduced against the exact database and parameter set. Use configured search, fetch, read, browser, test, and write...Votes: 0GitHub stars: 2
- Omics Data Proteomics Search Space Recovery Readiness DrillUse when the proteomics search-space provenance workflow needs a safe recovery, rollback, replay, or continuity check to produce a recovery-drill record for the search-space configuration record with starting state, test, and observed outcome. Success means the dry-run or approved non-production drill meets the predeclared recovery target and leaves the baseline intact; the search can be reproduced against the exact database and parameter set. Use configured search, fetch, read, browser, test...Votes: 0GitHub stars: 2
- Omics Data Proteomics Search Space Scenario Sensitivity MatrixUse when the proteomics search-space provenance team needs to compare options under changing assumptions to produce a baseline-plus-scenarios matrix for the search-space configuration record with assumptions and ranges. Success means the baseline is reproducible, scenario inputs are explicit, comparable units are used, and conclusions state uncertainty; the search can be reproduced against the exact database and parameter set. Use configured search, fetch, read, browser, test, and write capab...Votes: 0GitHub stars: 2
- Omics Data Proteomics Search Space Scope Intake GateUse when a new proteomics search-space provenance request needs a bounded work scope to produce a scoped intake card for the search-space configuration record. Success means owner, objective, permitted sources, acceptance condition, exclusions, and deadline are explicit; the search can be reproduced against the exact database and parameter set. Use configured search, fetch, read, browser, test, and write capabilities only when relevant and authorized. Record evidence, limit refinement to thre...Votes: 0GitHub stars: 2
- Omics Data Proteomics Search Space Source Provenance LedgerUse when a decision about proteomics search-space provenance depends on facts from several records or public sources to produce a source-to-claim provenance ledger for the search-space configuration record. Success means each material claim has a source, version/date, location, and confidence note; the search can be reproduced against the exact database and parameter set. Use configured search, fetch, read, browser, test, and write capabilities only when relevant and authorized. Record eviden...Votes: 0GitHub stars: 2
- Omics Data Proteomics Search Space Threshold Rule CheckUse when a proteomics search-space provenance decision depends on a limit, eligibility rule, policy, or target to produce a rule-check record for the search-space configuration record showing source, units, boundary case, and outcome. Success means the rule source and effective date are verified, units and scope match, and borderline cases are flagged rather than auto-approved; the search can be reproduced against the exact database and parameter set. Use configured search, fetch, read, brows...Votes: 0GitHub stars: 2
- Omics Data Reference Provenance Approval Evidence PacketUse when a genome and transcript reference provenance result is ready for a human owner to approve, reject, or redirect to produce a decision packet for the reference-build provenance card containing options, evidence, risks, and open questions. Success means the decision owner, requested decision, source evidence, alternatives, uncertainty, and consequence of no action are all visible; all downstream coordinates identify the exact reference and annotation versions. Use configured search, fet...Votes: 0GitHub stars: 2
- Omics Data Reference Provenance Change Impact TraceUse when a version, rule, source, or stakeholder change may affect genome and transcript reference provenance to produce a before/after change record and impact map for the reference-build provenance card. Success means each material difference is tied to affected dependencies, consumers, owners, and a test or explicitly unknown impact; all downstream coordinates identify the exact reference and annotation versions. Use configured search, fetch, read, browser, test, and write capabilities onl...Votes: 0GitHub stars: 2
- Omics Data Reference Provenance Closeout Handoff LedgerUse when a genome and transcript reference provenance work item is nearing completion, pause, or transfer to another owner to produce a closeout ledger for the reference-build provenance card with status, evidence, owner, and retention state. Success means all deliverables, unresolved items, approvals, and next owners are recorded, and the stop reason is explicit; all downstream coordinates identify the exact reference and annotation versions. Use configured search, fetch, read, browser, test...Votes: 0GitHub stars: 2
- Omics Data Reference Provenance Completeness ReconciliationUse when the genome and transcript reference provenance workflow receives records that must agree across sources, periods, or statuses to produce a reconciliation worksheet for the reference-build provenance card with matched, unmatched, and unresolved rows. Success means counts and key fields reconcile or every variance is quantified, sourced, and left unresolved for an owner; all downstream coordinates identify the exact reference and annotation versions. Use configured search, fetch, read,...Votes: 0GitHub stars: 2
- Omics Data Reference Provenance Exception Triage QueueUse when the genome and transcript reference provenance workflow has exceptions, missing evidence, or competing priorities to produce a prioritized exception queue for the reference-build provenance card with evidence, owner, and next action. Success means every exception has a severity rationale, source, owner or explicit unassigned state, and a bounded next step; all downstream coordinates identify the exact reference and annotation versions. Use configured search, fetch, read, browser, tes...Votes: 0GitHub stars: 2
- Omics Data Reference Provenance Recovery Readiness DrillUse when the genome and transcript reference provenance workflow needs a safe recovery, rollback, replay, or continuity check to produce a recovery-drill record for the reference-build provenance card with starting state, test, and observed outcome. Success means the dry-run or approved non-production drill meets the predeclared recovery target and leaves the baseline intact; all downstream coordinates identify the exact reference and annotation versions. Use configured search, fetch, read, b...Votes: 0GitHub stars: 2
- Omics Data Reference Provenance Scenario Sensitivity MatrixUse when the genome and transcript reference provenance team needs to compare options under changing assumptions to produce a baseline-plus-scenarios matrix for the reference-build provenance card with assumptions and ranges. Success means the baseline is reproducible, scenario inputs are explicit, comparable units are used, and conclusions state uncertainty; all downstream coordinates identify the exact reference and annotation versions. Use configured search, fetch, read, browser, test, and...Votes: 0GitHub stars: 2
- Omics Data Reference Provenance Scope Intake GateUse when a new genome and transcript reference provenance request needs a bounded work scope to produce a scoped intake card for the reference-build provenance card. Success means owner, objective, permitted sources, acceptance condition, exclusions, and deadline are explicit; all downstream coordinates identify the exact reference and annotation versions. Use configured search, fetch, read, browser, test, and write capabilities only when relevant and authorized. Record evidence, limit refine...Votes: 0GitHub stars: 2
- Omics Data Reference Provenance Source Provenance LedgerUse when a decision about genome and transcript reference provenance depends on facts from several records or public sources to produce a source-to-claim provenance ledger for the reference-build provenance card. Success means each material claim has a source, version/date, location, and confidence note; all downstream coordinates identify the exact reference and annotation versions. Use configured search, fetch, read, browser, test, and write capabilities only when relevant and authorized. R...Votes: 0GitHub stars: 2
- Omics Data Reference Provenance Threshold Rule CheckUse when a genome and transcript reference provenance decision depends on a limit, eligibility rule, policy, or target to produce a rule-check record for the reference-build provenance card showing source, units, boundary case, and outcome. Success means the rule source and effective date are verified, units and scope match, and borderline cases are flagged rather than auto-approved; all downstream coordinates identify the exact reference and annotation versions. Use configured search, fetch,...Votes: 0GitHub stars: 2
- Omics Data Sample Sheet Approval Evidence PacketUse when a omics sample-sheet integrity result is ready for a human owner to approve, reject, or redirect to produce a decision packet for the sample-sheet reconciliation containing options, evidence, risks, and open questions. Success means the decision owner, requested decision, source evidence, alternatives, uncertainty, and consequence of no action are all visible; each analyzed file maps to one approved coded sample and conflicts are not guessed. Use configured search, fetch, read, brows...Votes: 0GitHub stars: 2
- Omics Data Sample Sheet Change Impact TraceUse when a version, rule, source, or stakeholder change may affect omics sample-sheet integrity to produce a before/after change record and impact map for the sample-sheet reconciliation. Success means each material difference is tied to affected dependencies, consumers, owners, and a test or explicitly unknown impact; each analyzed file maps to one approved coded sample and conflicts are not guessed. Use configured search, fetch, read, browser, test, and write capabilities only when relevant...Votes: 0GitHub stars: 2
- Omics Data Sample Sheet Closeout Handoff LedgerUse when a omics sample-sheet integrity work item is nearing completion, pause, or transfer to another owner to produce a closeout ledger for the sample-sheet reconciliation with status, evidence, owner, and retention state. Success means all deliverables, unresolved items, approvals, and next owners are recorded, and the stop reason is explicit; each analyzed file maps to one approved coded sample and conflicts are not guessed. Use configured search, fetch, read, browser, test, and write cap...Votes: 0GitHub stars: 2
- Omics Data Sample Sheet Completeness ReconciliationUse when the omics sample-sheet integrity workflow receives records that must agree across sources, periods, or statuses to produce a reconciliation worksheet for the sample-sheet reconciliation with matched, unmatched, and unresolved rows. Success means counts and key fields reconcile or every variance is quantified, sourced, and left unresolved for an owner; each analyzed file maps to one approved coded sample and conflicts are not guessed. Use configured search, fetch, read, browser, test,...Votes: 0GitHub stars: 2
- Omics Data Sample Sheet Exception Triage QueueUse when the omics sample-sheet integrity workflow has exceptions, missing evidence, or competing priorities to produce a prioritized exception queue for the sample-sheet reconciliation with evidence, owner, and next action. Success means every exception has a severity rationale, source, owner or explicit unassigned state, and a bounded next step; each analyzed file maps to one approved coded sample and conflicts are not guessed. Use configured search, fetch, read, browser, test, and write ca...Votes: 0GitHub stars: 2
- Omics Data Sample Sheet Recovery Readiness DrillUse when the omics sample-sheet integrity workflow needs a safe recovery, rollback, replay, or continuity check to produce a recovery-drill record for the sample-sheet reconciliation with starting state, test, and observed outcome. Success means the dry-run or approved non-production drill meets the predeclared recovery target and leaves the baseline intact; each analyzed file maps to one approved coded sample and conflicts are not guessed. Use configured search, fetch, read, browser, test, a...Votes: 0GitHub stars: 2
- Omics Data Sample Sheet Scenario Sensitivity MatrixUse when the omics sample-sheet integrity team needs to compare options under changing assumptions to produce a baseline-plus-scenarios matrix for the sample-sheet reconciliation with assumptions and ranges. Success means the baseline is reproducible, scenario inputs are explicit, comparable units are used, and conclusions state uncertainty; each analyzed file maps to one approved coded sample and conflicts are not guessed. Use configured search, fetch, read, browser, test, and write capabili...Votes: 0GitHub stars: 2
- Omics Data Sample Sheet Scope Intake GateUse when a new omics sample-sheet integrity request needs a bounded work scope to produce a scoped intake card for the sample-sheet reconciliation. Success means owner, objective, permitted sources, acceptance condition, exclusions, and deadline are explicit; each analyzed file maps to one approved coded sample and conflicts are not guessed. Use configured search, fetch, read, browser, test, and write capabilities only when relevant and authorized. Record evidence, limit refinement to three f...Votes: 0GitHub stars: 2
- Omics Data Sample Sheet Source Provenance LedgerUse when a decision about omics sample-sheet integrity depends on facts from several records or public sources to produce a source-to-claim provenance ledger for the sample-sheet reconciliation. Success means each material claim has a source, version/date, location, and confidence note; each analyzed file maps to one approved coded sample and conflicts are not guessed. Use configured search, fetch, read, browser, test, and write capabilities only when relevant and authorized. Record evidence,...Votes: 0GitHub stars: 2
- Omics Data Sample Sheet Threshold Rule CheckUse when a omics sample-sheet integrity decision depends on a limit, eligibility rule, policy, or target to produce a rule-check record for the sample-sheet reconciliation showing source, units, boundary case, and outcome. Success means the rule source and effective date are verified, units and scope match, and borderline cases are flagged rather than auto-approved; each analyzed file maps to one approved coded sample and conflicts are not guessed. Use configured search, fetch, read, browser,...Votes: 0GitHub stars: 2
- Omics Data Single Cell Qc Approval Evidence PacketUse when a single-cell assay QC provenance result is ready for a human owner to approve, reject, or redirect to produce a decision packet for the single-cell QC parameter ledger containing options, evidence, risks, and open questions. Success means the decision owner, requested decision, source evidence, alternatives, uncertainty, and consequence of no action are all visible; every exclusion rule is reproducible and no threshold is presented as universal. Use configured search, fetch, read, b...Votes: 0GitHub stars: 2
- Omics Data Single Cell Qc Change Impact TraceUse when a version, rule, source, or stakeholder change may affect single-cell assay QC provenance to produce a before/after change record and impact map for the single-cell QC parameter ledger. Success means each material difference is tied to affected dependencies, consumers, owners, and a test or explicitly unknown impact; every exclusion rule is reproducible and no threshold is presented as universal. Use configured search, fetch, read, browser, test, and write capabilities only when rele...Votes: 0GitHub stars: 2
- Omics Data Single Cell Qc Closeout Handoff LedgerUse when a single-cell assay QC provenance work item is nearing completion, pause, or transfer to another owner to produce a closeout ledger for the single-cell QC parameter ledger with status, evidence, owner, and retention state. Success means all deliverables, unresolved items, approvals, and next owners are recorded, and the stop reason is explicit; every exclusion rule is reproducible and no threshold is presented as universal. Use configured search, fetch, read, browser, test, and write...Votes: 0GitHub stars: 2
- Omics Data Single Cell Qc Completeness ReconciliationUse when the single-cell assay QC provenance workflow receives records that must agree across sources, periods, or statuses to produce a reconciliation worksheet for the single-cell QC parameter ledger with matched, unmatched, and unresolved rows. Success means counts and key fields reconcile or every variance is quantified, sourced, and left unresolved for an owner; every exclusion rule is reproducible and no threshold is presented as universal. Use configured search, fetch, read, browser, t...Votes: 0GitHub stars: 2
- Omics Data Single Cell Qc Exception Triage QueueUse when the single-cell assay QC provenance workflow has exceptions, missing evidence, or competing priorities to produce a prioritized exception queue for the single-cell QC parameter ledger with evidence, owner, and next action. Success means every exception has a severity rationale, source, owner or explicit unassigned state, and a bounded next step; every exclusion rule is reproducible and no threshold is presented as universal. Use configured search, fetch, read, browser, test, and writ...Votes: 0GitHub stars: 2
- Omics Data Single Cell Qc Recovery Readiness DrillUse when the single-cell assay QC provenance workflow needs a safe recovery, rollback, replay, or continuity check to produce a recovery-drill record for the single-cell QC parameter ledger with starting state, test, and observed outcome. Success means the dry-run or approved non-production drill meets the predeclared recovery target and leaves the baseline intact; every exclusion rule is reproducible and no threshold is presented as universal. Use configured search, fetch, read, browser, tes...Votes: 0GitHub stars: 2
- Omics Data Single Cell Qc Scenario Sensitivity MatrixUse when the single-cell assay QC provenance team needs to compare options under changing assumptions to produce a baseline-plus-scenarios matrix for the single-cell QC parameter ledger with assumptions and ranges. Success means the baseline is reproducible, scenario inputs are explicit, comparable units are used, and conclusions state uncertainty; every exclusion rule is reproducible and no threshold is presented as universal. Use configured search, fetch, read, browser, test, and write capa...Votes: 0GitHub stars: 2
- Omics Data Single Cell Qc Scope Intake GateUse when a new single-cell assay QC provenance request needs a bounded work scope to produce a scoped intake card for the single-cell QC parameter ledger. Success means owner, objective, permitted sources, acceptance condition, exclusions, and deadline are explicit; every exclusion rule is reproducible and no threshold is presented as universal. Use configured search, fetch, read, browser, test, and write capabilities only when relevant and authorized. Record evidence, limit refinement to thr...Votes: 0GitHub stars: 2
- Omics Data Single Cell Qc Source Provenance LedgerUse when a decision about single-cell assay QC provenance depends on facts from several records or public sources to produce a source-to-claim provenance ledger for the single-cell QC parameter ledger. Success means each material claim has a source, version/date, location, and confidence note; every exclusion rule is reproducible and no threshold is presented as universal. Use configured search, fetch, read, browser, test, and write capabilities only when relevant and authorized. Record evide...Votes: 0GitHub stars: 2
- Omics Data Single Cell Qc Threshold Rule CheckUse when a single-cell assay QC provenance decision depends on a limit, eligibility rule, policy, or target to produce a rule-check record for the single-cell QC parameter ledger showing source, units, boundary case, and outcome. Success means the rule source and effective date are verified, units and scope match, and borderline cases are flagged rather than auto-approved; every exclusion rule is reproducible and no threshold is presented as universal. Use configured search, fetch, read, brow...Votes: 0GitHub stars: 2
- Proteomics Quantification ReviewUse when a task involves reviewing a proteomics quantification workflow for sample design, peptide evidence, normalization, and missingness to identify the research or operational question, target population or system, relevant version, sensitive data, and approval boundary before acting. Use current primary sources, produce a traceable artifact, and verify it against explicit criteria. Trigger for planning, analysis, review, or troubleshooting in this focused domain; do not execute external ...Votes: 0GitHub stars: 2
- Rna Seq Differential Expression ReviewUse when a task involves reviewing an RNA-seq differential-expression analysis for design, normalization, contrasts, and reproducible results to identify the research or operational question, target population or system, relevant version, sensitive data, and approval boundary before acting. Use current primary sources, produce a traceable artifact, and verify it against explicit criteria. Trigger for planning, analysis, review, or troubleshooting in this focused domain; do not execute externa...Votes: 0GitHub stars: 2
- Single Cell Cluster Annotation ReviewUse when a task involves reviewing proposed cell-type annotations from single-cell data against marker evidence and experimental context to identify the research or operational question, target population or system, relevant version, sensitive data, and approval boundary before acting. Use current primary sources, produce a traceable artifact, and verify it against explicit criteria. Trigger for planning, analysis, review, or troubleshooting in this focused domain; do not execute external wri...Votes: 0GitHub stars: 2
- Single Cell Rna AnalysisUse when a task involves planning or reviewing single-cell RNA sequencing analysis with explicit QC, batch, and interpretation controls to identify the intended outcome, relevant inputs, platform or version, sensitive data, and permission boundary before acting. Use current primary documentation for version-sensitive behavior, produce a reviewable artifact, and verify it against stated criteria. Trigger for planning, implementation, evaluation, or troubleshooting in this focused domain; do no...Votes: 0GitHub stars: 2
- Species Distribution Model ValidationUse when a task involves validating a model that predicts potential species distribution from environmental data to define the target, lifecycle stage, controlling artifact, authoritative evidence, version or operating conditions, sensitivity, and approval boundary before applying the method. Separate observed facts from assumptions and model output. Verify the result with appropriate independent checks, preserve provenance, and report uncertainty and limitations. Do not perform production, f...Votes: 0GitHub stars: 2
- Species Occurrence Data HarmonizationUse when a task involves harmonizing biodiversity occurrence records across surveys and data providers to define the target, lifecycle stage, controlling artifact, authoritative evidence, version or operating conditions, sensitivity, and approval boundary before applying the method. Separate observed facts from assumptions and model output. Verify the result with appropriate independent checks, preserve provenance, and report uncertainty and limitations. Do not perform production, financial, ...Votes: 0GitHub stars: 2
- Wildlife Camera Trap Data CurationUse when a task involves curating camera-trap image collections for authorized biodiversity monitoring to define the target, lifecycle stage, controlling artifact, authoritative evidence, version or operating conditions, sensitivity, and approval boundary before applying the method. Separate observed facts from assumptions and model output. Verify the result with appropriate independent checks, preserve provenance, and report uncertainty and limitations. Do not perform production, financial, ...Votes: 0GitHub stars: 2
- Wildlife Image Label Quality AuditUse when a task involves auditing species and event labels in a wildlife image dataset to define the target, lifecycle stage, controlling artifact, authoritative evidence, version or operating conditions, sensitivity, and approval boundary before applying the method. Separate observed facts from assumptions and model output. Verify the result with appropriate independent checks, preserve provenance, and report uncertainty and limitations. Do not perform production, financial, hardware-control...Votes: 0GitHub stars: 2
- Wildlife Monitoring Domain Shift AuditUse when a task involves checking whether wildlife monitoring models generalize across sites, seasons, and equipment to define the target, lifecycle stage, controlling artifact, authoritative evidence, version or operating conditions, sensitivity, and approval boundary before applying the method. Separate observed facts from assumptions and model output. Verify the result with appropriate independent checks, preserve provenance, and report uncertainty and limitations. Do not perform productio...Votes: 0GitHub stars: 2
- Wildlife Occupancy Study DesignUse when a task involves planning repeated wildlife surveys that estimate site occupancy despite imperfect detection to define the target, lifecycle stage, controlling artifact, authoritative evidence, version or operating conditions, sensitivity, and approval boundary before applying the method. Separate observed facts from assumptions and model output. Verify the result with appropriate independent checks, preserve provenance, and report uncertainty and limitations. Do not perform productio...Votes: 0GitHub stars: 2
- Medical Imaging Alert Fatigue And Priority ReviewUse when a task involves reviewing the volume, urgency, and routing of model-generated imaging alerts to record whether the work is research, engineering, or an approved product-lifecycle activity; define data authorization, intended use, evaluation population, technical environment, accountable domain owner, and success criteria. Use synthetic or approved de-identified data, preserve provenance and limitations, and involve qualified clinical, privacy, regulatory, and data-governance reviewer...Votes: 0GitHub stars: 2
- Medical Imaging Annotation Sampling And Audit PlanUse when a task involves selecting a reproducible subset of imaging annotations for independent quality review to record whether the work is research, engineering, or an approved product-lifecycle activity; define data authorization, intended use, evaluation population, technical environment, accountable domain owner, and success criteria. Use synthetic or approved de-identified data, preserve provenance and limitations, and involve qualified clinical, privacy, regulatory, and data-governance...Votes: 0GitHub stars: 2