Claude Skills by brycewang-stanford

Reproducible Python environments, notebooks, and literate programming

Create reproducible research workflows with R and RMarkdown/Quarto

Secure sandboxed code execution environments for reproducible research computing

9 diagrams & visuals skills. Trigger: creating diagrams, flowcharts, architecture visuals, LaTeX drawings. Design: tool-specific guides (Mermaid, Excalidraw, TikZ) with academic conventions.

Convert Python, JavaScript, and TypeScript functions into Mermaid flowcharts

Generate hand-drawn style Excalidraw diagrams from text descriptions

Guide to JSON Crack for visualizing complex JSON data structures

Generate diagrams from text via Kroki's multi-format rendering API

Design complex multi-diagram architectures using advanced Mermaid syntax

Create flowcharts, sequence diagrams, and architecture diagrams with Mermaid

Create UML diagrams and architecture visualizations with PlantUML

Create graphical abstracts, schematic diagrams, and scientific illustrations

Guide to tldraw for infinite canvas whiteboarding and diagram creation

10 document processing skills. Trigger: extracting text from PDFs, parsing references, document Q&A. Design: parsing pipelines (GROBID, marker) and structured extraction tools.

Citation reference parser using machine learning

Deploy DocsGPT for private document analysis and research knowledge bases

Extract structured text, metadata, and references from academic PDFs

Split and read long documents chapter-by-chapter for structured analysis

Write academic papers in Markdown with Pandoc for multi-format output

Deep dual-mode reading of academic papers from PDF or URL sources

PDF parsing, text extraction, and document format conversion

Plugin marketplace and discovery platform for Zotero

Dark mode theme plugin for Zotero reference manager

Feature-rich Zotero plugin for UI customization and styling

9 knowledge graphs skills. Trigger: building knowledge graphs, connecting concepts, ontology design. Design: graph construction, traversal, and visualization for research knowledge.

Build and analyze citation networks from academic reference data

Generate structured concept maps from academic texts automatically

Build real-time knowledge graphs for AI agents using Graphiti by Zep

Build research knowledge graphs for literature synthesis and RAG systems

Sync Zotero references and annotations to Notion databases

Design ontologies and knowledge graphs for research data modeling

Ant Group knowledge graph engine with SPG and KAG framework

RAG architecture for academic knowledge retrieval and synthesis

Sync Zotero references to Obsidian and Logseq markdown

7 ocr & translation skills. Trigger: scanning documents, recognizing formulas, translating academic papers. Design: specialized OCR (LaTeX, handwriting) and translation for scholarly content.

Apply handwriting OCR to digitize historical and archival documents

Extract and convert mathematical formulas from images and PDFs to LaTeX code

Translate LaTeX documents preserving math formulas and structure

Strategies for translating academic papers while preserving technical accuracy

Translate scientific PDFs with preserved math formatting via PDFMathTranslate

Guide to Zotero PDF Translate for multilingual PDF and annotation translation

PDF Chinese translation plugin for Zotero reference manager

6 web scraping & data collection skills. Trigger: collecting web data, finding datasets, API access for research. Design: ethical scraping methods with rate limiting and data quality checks.

Ethical web scraping and API-based data collection for research

Search and download research datasets from Kaggle, HuggingFace, and repos

Guide to EasySpider for visual no-code web data collection

Ethical Google Scholar data collection techniques and best practices

Harvest metadata from open repositories using OAI-PMH protocol

Scrape web data ethically and legally for research purposes

22 citation management skills. Trigger: managing references, formatting citations, BibTeX, bibliographies. Design: reference manager integrations and citation style guides (APA, IEEE, etc.).