Claude Skills by Aperivue

Vet the concrete third-party model a study will be built on — this repository, this revision, this checkpoint — not the architecture family. Records a model dossier (source and version pin, licence and the file it was read from, intended use, pretrained-weight provenance, model task vs study task, reported validation, what the model was developed on, your evaluation arms) and gates it deterministically. Catches what a licence check and a citation count cannot: an evaluation arm sitting on the...

Design or audit the clinical-validation study for an engineer-built medical-imaging model (segmentation, classification, or detection) before the validation report or manuscript is written. Covers patient-level split disjointness and the data-leakage taxonomy, tuning-on-test, internal versus genuine external validation, comparator design, single-run versus multi-seed variance, task-correct metric selection, test-set sizing, and CLAIM 2024 / TRIPOD+AI / STARD-AI reporting fit. Ships a determin...

Turn a folder of research PDFs into an Obsidian knowledge vault — consistently formatted literature notes with frontmatter, PDF embed links, and cross-referenced atomic concept notes. Use whenever the user wants PDFs converted to Obsidian notes, a batch of papers summarized into a common template, a research "second brain" built or extended, or concepts extracted across accumulated notes — even if they never say "Obsidian". Pairs with /lit-sync, which owns the same vault folders from the Zote...

Academic English consistency linting and non-native (ESL) language polish for medical manuscripts. Deterministically flags abbreviation define-once violations, US/UK spelling drift, hyphen-vs-en-dash numeric ranges, P/p case, hyphenation variants, small-number style, and value/unit spacing, then guides a style-only clarity pass that never alters numbers, citations, or scientific meaning. Distinct from humanize (AI-tell removal) and check-reporting (guideline items).

Design or audit the data-preparation stage of a medical-imaging model — DICOM/NIfTI intake, resampling and intensity normalisation, and the augmentation plan — so the pipeline is leakage-safe before model-scaffold builds the training repo. Emits a declarative preprocessing manifest and a deterministic data-stage leakage gate that catches the leaks a split table cannot see: a dataset-level normaliser fit on non-train data, any data-fitted transform run before the split, and the same patient's ...

Profile a medical-imaging dataset before any modelling decision is made — the acquisition grid, voxel spacing and orientation spread, the intensity domain, which label values are actually present, how much of the volume the target occupies, and how large the target is in millilitres — then gate that profile against the researcher's declared plan. Catches, at the point where it is still cheap, the dataset facts that otherwise surface after a training run: a "test set" that carries no ground tr...

Produce or audit a radiomics / tabular clinical-ML study — imaging or clinical features → any classical learner (penalised logistic [LASSO / ridge / elastic-net], SVM, k-NN, naive Bayes, LDA/QDA, decision tree, random forest, gradient boosting [XGBoost / LightGBM / CatBoost], shallow MLP, stacked ensembles) → a clinical outcome — so it clears the rigor bar reviewers expect: nested cross-validation (tuning never on the reported folds), dimensionality control for the features-far-exceed-events ...

Scaffold and draft medical/AI literature reviews (narrative, scoping PRISMA-ScR, or systematic). Asks for the spine axis, builds a 7-part skeleton with a required Intro scope/non-overlap block, a summary-table stub, an evaluation-metrics critique subsection, and reporting-guideline wiring. Reuses the self-review RV1-RV9 narrative-review probes for QC. Does not invent citations.

Design or audit the uncertainty-quantification, out-of-distribution (OOD) detection, and selective-prediction layer of a medical-imaging model framed for deployment — so a clinical-use claim carries calibrated per-case uncertainty (MC-dropout / deep ensemble / conformal / Bayesian), an OOD guard validated on a held-out OOD set, an abstention rule at a pre-specified operating point, and uncertainty checked under distribution shift. Emits an uncertainty manifest and a deterministic gate that fl...

Dataset version control for research reproducibility. Builds a deterministic content-hash manifest of a dataset (file SHA-256 + tabular schema + per-column value hashes), verifies a later copy against it to detect drift (schema change, row-count change, value changes), and diffs two manifests. Use to prove an analysis ran on the intended data, lock a dataset version, or reproducibility-lock bundled demos.

Run the manuscript through each applicable category below. For each item, assess whether a reviewer would raise it as a Major or Minor comment. Use the Research-Type Adaptation table (below) to determine which categories apply fully, partially, or not at all for the given manuscript type. | Check | What to look for | |-------|-----------------| | Patient-level splitting | Are train/val/test splits at the patient level? Is this explicitly stated? | | Leakage risk | Any postoperative variable u...