Research

Write H2 chapter lead blocks (`sections/S<sec_id>_lead.md`) that preview the chapter's comparison lens and connect its H3 subsections, without adding new facts.

Build per-chapter (H2) writing briefs (NO PROSE) so the final survey reads like a paper (chapter leads + cross-H3 coherence) without inflating the ToC.

Use when `evidence-review` has an extraction table and needs lightweight risk-of-bias fields.

Retrieve arXiv paper metadata with keyword queries or import an offline arXiv export, and save results as JSONL (`papers/papers_raw.jsonl`).

Audit the workspace against the pipeline artifact contract (DONE outputs + pipeline target_artifacts). Writes `output/CONTRACT_REPORT.md`. **Trigger**: contract audit, artifact contract, missing artifacts, target_artifacts, CONTRACT_REPORT. **Use when**: you want an auditable PASS/FAIL view of whether a workspace is complete and self-contained (end of run or before sharing). **Skip if**: you are still intentionally mid-run and don’t care about completeness yet (but it’s still useful as a snap...

Download a small corpus of open-access arXiv survey/review PDFs about agentic systems and extract text for style learning.

Performs quality control, citation validation, and fact-checking before human review. Use after research is complete to verify all sources and claims before production.

Researches project histories, changelogs, developer interviews, and open source documentation. Use when the album subject involves technology projects or developer stories.

Researches malware analysis, CVEs, attribution reports, and hacker community sources. Use when the album subject involves cybersecurity incidents or threat actors.

Researches the subject's own words from tweets, blogs, forums, and chat logs. Use when research needs direct quotes or first-person accounts.

Researches court documents, indictments, plea agreements, and sentencing records. Use when the album subject involves legal proceedings or criminal cases.

Researches investigative articles, interviews, and news coverage. Use when research needs journalistic sources for cross-referencing or additional context.

Researches archives, contemporary accounts, and timeline reconstruction. Use when the album subject involves historical events that need primary source verification.

Researches DOJ/FBI/SEC press releases, agency statements, and government sources. Use when research needs official government records or agency documentation.

Researches SEC filings, earnings calls, analyst reports, and market data. Use when the album subject involves financial crimes, corporate stories, or market events.

Researches personal backgrounds, interviews, motivations, and humanizing details. Use when research needs biographical context about people involved in the album's subject.

Conducts investigative-grade research with primary source analysis, cross-verification, and trial-level depth. Use when an album needs factual research, source material, or verification of claims.

Searches and retrieves documents from free public sources using automated browser navigation. Use when research needs primary source documents like court filings, government reports, or public records.

This skill identifies the locations of known transcription factor (TF) binding motifs within genomic regions such as ChIP-seq or ATAC-seq peaks. It utilizes HOMER to search for specific sequence motifs defined by position-specific scoring matrices (PSSMs) from known motif databases. Use this skill when you need to detect the presence and precise genomic coordinates of known TF binding motifs within experimentally defined regions such as ChIP-seq or ATAC-seq peaks.

This skill identifies novel transcription factor binding motifs in the promoter regions of genes, or directly from genomic regions of interest such as ChIP-seq peaks, ATAC-seq accessible sites, or differentially acessible regions. It employs HOMER (Hypergeometric Optimization of Motif Enrichment) to detect both known and previously uncharacterized sequence motifs enriched within the supplied genomic intervals. Use the skill when you need to uncover sequence motifs enriched or want to know whi...

Assists in writing high-quality content by conducting research, adding citations, improving hooks, iterating on outlines, and providing real-time feedback on each section. Transforms your writing process from solo effort to collaborative partnership.

Methodology for categorizing changes, assessing risks, and creating summaries from any changeset. Triggers: diff analysis, changeset review, risk assessment, change categorization, semantic analysis, release preparation, change summary, git diff Use when: analyzing specific changesets, assessing risk of changes, preparing release notes, categorizing changes by type and impact DO NOT use when: quick context catchup - use catchup instead. DO NOT use when: full PR review - use review-core wit...

Establish cause-effect relationships between events or states. Use when analyzing root causes, mapping dependencies, tracing effects, or building causal models.

Analyzes an AI/ML publication — paper, preprint, article, technical blog post — and extracts what an enterprise AI engineer should do about it. Use when someone supplies a URL or document on RAG, embeddings, fine-tuning, prompt engineering, agents, or LLM deployment and asks "review this paper", "what do you make of this", "is this worth adopting", or "summarise the method and its limits". The subject matter must itself be machine learning.