Claude Skills by HolobiomicsLab

Use when you have raw or heterogeneous molecular structure inputs (SMILES

Use when ingesting heterogeneous raw chemical structures from external

Use when when a scientific software repository documents multiple standalone

Use when you have generated or received a mass spectrometry data file

Use when you have raw LipidSearch or LIQUID output files (CSV or TSV

Use when when you have deposited a collection of JSON project documents

Use when when you have mwTab-formatted Mass Spectrometry or Nuclear Magnetic

Use when you have obtained a raw reference library file (such as the

Use when when you need to understand the modular composition of a multi-component

Use when when executing a multi-converter annotation workflow on mass

Use when when you have tandem mass spectra (MSMS) from related or candidate

Use when after applying jsonschema validation to a parsed mwTab file

Use when after retrieving a JSON or tabular response from a web service

Use when you have metabolomics results from multiple independent studies

Use when after PRESTO-TOP topic modelling has been run on redundancy-filtered

Use when you have a GLASSO-inferred sparse network graph and associated

Use when when you have MS/MS spectra with assigned precursor formulas

'Use when when performing chemical denoising of MS/MS spectra: after

Use when when performing chemical noise removal on MS/MS spectra and

Use when you have annotated genes with Pfam domains but require higher

Use when you have LC-MS normalized intracellular metabolite abundance

Use when you have created a GNPS molecular network (classical or feature-based

Use when you have (1) a GNPS molecular network (classical or feature-based)

Use when you have high-dimensional metabolomics or genomics data stored

Use when when beginning a metabolomics analysis workflow in maplet, you

Use when when you have imported a tab-delimited metabolomics file (via

Use when you have cross-validated, filtered metabolomic NMR or MS data

Use when when working with metabolomics, proteomics, or other high-throughput

Use when when you have a SummarizedExperiment containing metabolomic

Use when when working with multi-batch metabolomics studies where you

Use when when you need to quantify and compare the effect of multiple

Use when you have completed batch spectral searches against multiple

Use when when you have clinical survival outcomes (event status and follow-up

Use when you have LC-MS peak/feature data, a curated suspect compound

Use when you have generated a set of transformation products (TPs) from

Use when you have SWATH-MS raw data (mzML or vendor format) from an untargeted

Use when you have a domain-specific language (DSL) grammar specification

Use when you need to create defined LC-MS/MS datasets with known molecular

Use when when you need to create benchmark LC-MS/MS datasets with controlled,

Use when when you have a small set of matched reference features (isolated,

Use when you need to query or extract data from Thermo Fisher Scientific

Use when after successfully installing and validating all components

Use when you need to execute a complex computational chemistry workflow

Use when a Shiny application or similar cross-platform tool is restricted

'Use when when setting up imzML Writer for the first time on a new machine,

Use when when processing multiple LC-MS samples in a cohort study and

Use when you have multiple draft metabolic reconstructions of community

Use when you have preprocessed, normalized, and imputed metabolite measurements

Use when after completing batch normalization and quality control filtering

Use when when you have raw metabolomics measurements in tab-delimited