Claude Skills by HolobiomicsLab

Use when when you need to validate that a package's periodic integration

Use when when you have cloned or obtained a Python package repository

Use when when you have cloned or obtained a Python package repository

Use when when you need to verify that a research software package (e.g.,

Use when after rewriting, refactoring, or updating a core computational

Use when when you have a peptide sequence and need to predict its fragment

Use when when processing mass spectrometry data from stable isotope probing

Use when you have a feature table from untargeted LC-MS (m/z, retention

Use when you have a defined set of lipid species (identified by class

Use when you have a mass spectrum scan containing observed precursor

Use when when you have a Thermo Fisher Scientific .

Use when you have acquired .raw files from a Thermo mass spectrometer

Use when you have acquired multidimensional mass spectrometry data (MS1,

Use when when you have LC-MS data in Thermo .raw format (a proprietary

Use when after molecular formula assignment and filtering of FT-ICR MS

'Use when when you have peak-abundance .csv files with assigned molecular

Use when when you have raw MS files (e.g., .raw, vendor-specific formats)

Use when when deploying Mass2SMILES inference on CPU-only hardware (e.g.,

Use when after computing pairwise similarity scores between query molecular

Use when you have downloaded or cloned a fragmentation library repository

Use when after calculating similarity metrics (e.g. cosine similarity

Use when after normalization (step 7) in untargeted metabolomic profiling

Use when when you have predicted probabilities and binary true labels

Use when you have experimental MS/MS spectra that must be matched against

Use when after feature detection when you have a metabolomics feature

Use when after sliding-window analysis has identified candidate TIC peaks

Use when you have loaded raw mass spectrometry data (mzML, mzXML, or

Use when you have raw mass spectrometry data (mzML, mzXML, or CDF format)

Use when when you have obtained or are considering use of the tima Docker

Use when when deploying a metabolomics processing tool (such as asari)

Use when working with raw FT-ICR transient data (e.g., ESI_NEG_SRFA.d

Use when you have time-resolved DBDI-MS data (intensity matrix with m/z

Use when when LCMS metabolomics abundance tables show systematic intensity

Use when you are planning a blood sampling campaign and need to know

Use when you have loaded a laser ablation ICP-MS image into pew² and

Use when you have raw IMC (protein imaging) and SIMS (metabolite imaging)

Use when you have LC-IM-MS/MS raw data from multiple tissue samples and

Use when your raw TOF-MS data (Agilent MassHunter .d format) exhibits

Use when when you need to deploy a Java web application packaged in a

Use when when beginning a LipoCLEAN analysis workflow and needing to

Use when you have exported lipid identifications from MS-DIAL (version

Use when you are setting up a new LipoCLEAN analysis for MS-DIAL output

Use when after completing Docker installation and container build steps

Use when you have selected a specific SECIMTools module (e.

Use when you have a working R package (e.g., IonFlow for ionomics data

Use when you have standalone metabolomics analysis tools (Python scripts,

Use when a machine learning model produces multiple ranked predictions

Use when when you have deployed a trained embedding or similarity model

Use when you have a ranked candidate list (e.g., BGCs sorted by IOKR

Use when after LDA topic inference has assigned dominant topic labels