Claude Skills by HolobiomicsLab

Use when when you have implemented parser functions for one or more mass

Use when when implementing or modifying a numerical compression/decompression

Use when after implementing or modifying basic peak filtering operations

Use when when you need to confirm that a research tool or package maintains

Use when when implementing or refactoring a FileInterface._open method

Use when you have a preprocessed feature table from non-targeted LC-MS/MS

Use when after running omu_summary (t-test) or omu_anova (ANOVA) on metabolomics

Use when you have paired metabolomics count data (metabolite abundance

Use when when you have an existing real mzML file from a metabolomics

Use when you have experimental LC–QTOF mass spectra from complex environmental

Use when you have UPLC-HRMS raw data (ThermoFisher, Agilent, or compatible

Use when you have a preprocessed unknown sample spectrum (m/z peaks and

Use when when annotating MS/MS spectra against spectral libraries and

Use when you have FT-ICR MS peak data with assigned molecular formulas

Use when you have a preprocessed feature matrix from metabolomics data

Use when when you have preprocessed mass spectral data (normalized peak

Use when when you have high-dimensional embedding vectors from pretrained

Use when when you have raw untargeted LC-MS metabolomics data and need

Use when you have a peak-intensity matrix from untargeted LC-MS analysis

Use when you have authentic metabolite standards analyzed by LC-MS in

Use when you have untargeted MS2 spectral data (from LC-MS/MS or similar

Use when after imputation and signal drift correction (OUKS steps 3–4),

Use when you have two LC-MS feature tables (each with m/z, retention

Use when you have a feature table from untargeted metabolomics (with

Use when you have an untargeted metabolomics feature table (m/z values,

Use when when you have untargeted GC–MS or LC–MS data in the form of

Use when you have LC-MS/MS data acquired in DDA mode from untargeted

Use when metabolomics featuredata exhibits unwanted variation from batch

Use when after loading and filtering search results from two or more

Use when ingesting or validating project JSON documents against a schema

Use when when compiling or maintaining a catalog of web-accessible scientific

Use when when you have a multi-step computational workflow (e.g., peak

Use when punc'data's automatic keyword-based column recognition produces

Use when when you need to retrieve mass spectrometry spectrum data from

Use when you have a Universal Spectrum Identifier (USI) string referencing

Use when when you have a USI string (e.g., mzspec:MTBLS1124:QC07.

Use when you have a USI accession (e.g., 'mzspec:MSV000082283:f07074:scan:5475'

Use when you have a USI string referencing a spectrum in an online public

Use when when you have a USI string (e.g., mzspec:GNPS:TASK-d93bdbb5cdda40e48975e6e18a45c3ce-f.mwang87/data/Yao_Streptomyces/roseosporus/0518_s_BuOH.

Use when you have received a validated dataset (e.g., interim/tables/4_analysed/platinum.tsv.

Use when when you have a ranked list of GCF-MF (genomic cluster family–molecular

Use when when you have scored GCF-MF (gene cluster family–molecular family)

Use when when you have computed multiple independent scoring functions

Use when when a parsed mwTab file (MS or NMR experimental data) must

Use when when you have loaded a project JSON document from the Pairing

Use when you have implemented or integrated a biochemical identifier

Use when you have a repository of structured records (e.g., mass spectrometry

Use when when designing a custom MsBackend subclass (e.g., MsBackendTest)

Use when after fitting a random forest classifier to metabolomics count

Use when you have a QC-annotated LC-MS feature intensity table (CSV or