Skills DirectoryResearch
Research, evidence gathering, literature, reports, investigation, and synthesis
Browse research skills
Showing 17,329–17,352 of 23,524 skills
Run Boltz-2 biomolecular interaction predictions for protein, nucleic-acid, ligand, and complex structures with binding-affinity outputs. Use for hit discovery, binder-versus-decoy prioritization, hit-to-lead comparisons, lead optimization, complex modeling, or reproducible Boltz YAML and batch inference workflows.
--> --- name: bio-medea-therapeutic-discovery description: An AI agent for therapeutic discovery that executes transparent, multi-step omics analyses including research planning, code execution, and literature reasoning. tool_type: mixed primary_tool: Unknown measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- Medea is a multi-stage AI agent designed for therapeutic discovery, modeled after 2026 state-...
--> <!-- AUTHOR_SIGNATURE: 9a7f3c2e-MD-BABU-MIA-2026-MSSM-SECURE --> --- name: 'biomed-multi-alignment-foundation-model' description: 'Use IBM biomed.omics.bl.sm.ma-ted-458m workflows to connect proteins, small molecules, and single-cell gene data for biomedical discovery.' measurable_outcome: 'Execute skill workflow successfully with valid output within 15 minutes.' allowed-tools: - read_file - run_shell_command - web_fetch ---
--> --- name: precision-oncology-agent description: Fuse genomic variants, pathology findings, and clinical context to draft evidence-linked therapy options for tumor board review. allowed-tools: - read_file - run_shell_command measurable_outcome: 'Deliver a ranked therapy list with OncoKB/NCCN citations plus data-gap checklist for every case within 10 minutes of receiving inputs.' ---
--> --- name: 'clinical-nlp-extractor' description: 'Extracts medical entities (Diseases, Medications, Procedures), patient outcomes with temporal anchors, and registry-oriented real-world data from unstructured clinical text using regex and simple rules (or LLM wrappers).' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- The **Clinical NLP Skill** converts free-text clinical notes into structured d...
--> <!-- AUTHOR_SIGNATURE: 9a7f3c2e-MD-BABU-MIA-2026-MSSM-SECURE --> --- name: 'clinical-llm-evaluation-benchmarking' description: 'Design and run clinical LLM evaluation benchmarks grounded in systematic review evidence on AI-generated clinical note evaluation methods.' measurable_outcome: 'Execute skill workflow successfully with valid output within 15 minutes.' allowed-tools: - read_file - run_shell_command - web_fetch ---
Design, evaluate, and operate agentic systems for biomedical and scientific discovery. Use when building or selecting agents for hypothesis generation, experiment planning, autonomous notebook analysis, lab-in-the-loop validation, pathology concept discovery, or multi-agent research workflows.
--> --- name: deep-research-swarm description: Coordinate a multi-agent research workflow for difficult literature or market-intelligence questions that need parallel search, verification, synthesis, and explicit evidence tracking. keywords: - research - literature - swarm - multi-agent - verification measurable_outcome: Produce a structured research package with search log, verified evidence summary, and open questions within 30 minutes for a focused topic. metadata: author: Biomedical OS Te...
--> --- name: automated-web-research description: Run evidence-first web research with multi-query search, page fetch, source vetting, and cited synthesis. Use when the answer depends on recent information, official documentation, or current external services. keywords: - research - web - citations - verification - official-docs measurable_outcome: Produce a cited brief grounded in at least 5 sources, with source-quality notes and unresolved gaps called out, within 20 minutes. metadata: autho...
Triage a raw bug report (pasted from email, WhatsApp, or anywhere) into a structured draft and, ONLY after the user approves, create a Linear issue. Trigger when the user pastes a bug report, forwards a tester complaint, or says "triage this", "log this bug", or "turn this into a ticket". Produces a draft with title, repro steps, severity, priority, a code-area hypothesis, and a list of what's missing — then waits for explicit confirmation before writing anything to Linear.
Transform research papers into interactive AI agents for exploration
Intelligent companion for ML engineering with arXiv integration
AI-driven multi-agent research assistant for end-to-end studies
Conducts market, competitive, domain, and technical research using live web sources, producing a cited research-report.md to inform BMAD planning decisions. Use when the user says: - "research [topic/market/technology]" - "competitive analysis" or "who are the competitors" - "market size" or "market landscape" - "technical research" or "evaluate [technology/framework]" - "domain research" or "industry analysis" - "what does the market look like" - "find out about [technology/space]" - "I nee...
Draft, restructure, or plan IEEE communications-journal manuscript sections (JSAC, TWC, TC/TCOM, WCL, CL): abstract + Index Terms, introduction with a contributions list, related work, system model, problem formulation, proposed solution/algorithm, performance analysis (theorems/proofs), numerical results, discussion, conclusion, title — from author claims, derivations, simulation results, figures, notes, or Chinese drafts. Use this whenever the user wants to WRITE or REBUILD comms paper text...
Search, verify, and organize literature for IEEE communications manuscripts: JSAC, TWC, TCOM, WCL, CL, IEEE conference papers, arXiv preprints, DOI/Crossref metadata, BibTeX, related-work matrices, novelty checks, and citation-gap audits. Use this when the user asks to "find papers", "latest IEEE papers", "related work", "verify DOI", "make BibTeX", "查文献", "找IEEE论文", "补参考文献", or compare a manuscript's claims against prior work. Use live search or available connectors for current facts; never ...
Polish academic prose to IEEE-journal style at the sentence level — clarity, sentence length, section-appropriate tense, calibrated hedging, US English, acronym discipline, numbered-citation phrasing, and unit/number formatting. Also translate Chinese drafts into IEEE-style English. Use this whenever the user wants to "polish", "proofread", "improve the English", "make it publishable / native", "fix the grammar", "润色", "改成地道英文", "改成投稿级" on existing text. Tuned for IEEE communications papers (...
Write or compress an IEEE communications LETTER for WCL (IEEE Wireless Communications Letters) or CL (IEEE Communications Letters): a single-contribution paper with a compressed introduction, no standalone related-work section, one system model, one core result (an algorithm OR a closed-form expression), and a tight simulation section under the current WCL/CL page budget. Use this whenever the target is a letter rather than a transactions paper — "write a WCL letter", "turn this into a letter...
Draft IEEE journal cover letters and editor-facing significance statements for new submissions or resubmissions to JSAC, TWC, TCOM, WCL, CL, and related IEEE venues. Use this when the user asks for a "cover letter", "submission letter", "letter to the editor", "significance statement", "special issue fit", "投稿信", "cover letter怎么写", or wants to frame novelty, scope, ethics, suggested reviewers, conflicts, or manuscript fit. For point-by-point reviewer replies use ieee-response; for rewriting m...
Draft, restructure, or plan IEEE communications-journal manuscript sections (JSAC, TWC, TC/TCOM, WCL, CL): abstract + Index Terms, introduction with a contributions list, related work, system model, problem formulation, proposed solution/algorithm, performance analysis (theorems/proofs), numerical results, discussion, conclusion, title — from author claims, derivations, simulation results, figures, notes, or Chinese drafts. Use this whenever the user wants to WRITE or REBUILD comms paper text...
Search, verify, and organize literature for IEEE communications manuscripts: JSAC, TWC, TCOM, WCL, CL, IEEE conference papers, arXiv preprints, DOI/Crossref metadata, BibTeX, related-work matrices, novelty checks, and citation-gap audits. Use this when the user asks to "find papers", "latest IEEE papers", "related work", "verify DOI", "make BibTeX", "查文献", "找IEEE论文", "补参考文献", or compare a manuscript's claims against prior work. Use live search or available connectors for current facts; never ...
Polish academic prose to IEEE-journal style at the sentence level — clarity, sentence length, section-appropriate tense, calibrated hedging, US English, acronym discipline, numbered-citation phrasing, and unit/number formatting. Also translate Chinese drafts into IEEE-style English. Use this whenever the user wants to "polish", "proofread", "improve the English", "make it publishable / native", "fix the grammar", "润色", "改成地道英文", "改成投稿级" on existing text. Tuned for IEEE communications papers (...
Write or compress an IEEE communications LETTER for WCL (IEEE Wireless Communications Letters) or CL (IEEE Communications Letters): a single-contribution paper with a compressed introduction, no standalone related-work section, one system model, one core result (an algorithm OR a closed-form expression), and a tight simulation section under the current WCL/CL page budget. Use this whenever the target is a letter rather than a transactions paper — "write a WCL letter", "turn this into a letter...
Draft IEEE journal cover letters and editor-facing significance statements for new submissions or resubmissions to JSAC, TWC, TCOM, WCL, CL, and related IEEE venues. Use this when the user asks for a "cover letter", "submission letter", "letter to the editor", "significance statement", "special issue fit", "投稿信", "cover letter怎么写", or wants to frame novelty, scope, ethics, suggested reviewers, conflicts, or manuscript fit. For point-by-point reviewer replies use ieee-response; for rewriting m...